|
Name : Bcen2424_0887 (Bcen2424_0887) Accession : YP_834533.1 Strain : Genome accession: NC_008542 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 995137 - 997020 bp Length : 1884 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-ter DNA sequence : ATGTTGCGATCCAGAGCATCTTGGCTGTCCCTGAGTGCTTTCCTGTTCGACCTGACGGCGGTTGTCGCCGCATGGTTGTT CGCTTATCTCGTTCGTTTCAACGGCAGCGTTCCGCATGATTTCCTGAGCGGCGCGCTGATGGCGCTGACGTGGGCACTGC CCGTCTATGCGCTGATGTTCCGCGGCTTCGGCCTGTATCGCGGGCTGTGGGTGTTCGCCAGCCTGCCCGATCTGATGCGC ATCGCGAAGGCGGTGGCCGGCGGCGGCGTGATCGTGATGATCGGTGCCGTGATGTTCCAGCCGCAGCCGATCATTCCGCG CTCGGTGCTGCTGGTGTCGCCGTTGATGCTGTTCCTGGCAATGGGTGGCGCGCGTGCGCTGTATCGCGCGACGAAGGAGT ACTACCTGTACGGTGGGCTGGTAGGCAAGGGCAAGCCGGTGCTGGTGCTGGGTGCCGGCACGGCCGGCGCGAGCCTCGCG CGCGAACTGTCGCGCTCCGGTGAATGGCGCTTGGTCGGCCTGCTCGACGACGACGTCACGAAACAGGGGCGCGAAATCTA CGGCTACAAGGTGCTGGGCTCGTTCAACGACCTCAAGCACTGGACCGATGCGATGAAGGTCGAATACGCGATCATCGCGA TTCCGTCGGCGTCGGTCGAAACACAGCGTCGCGTCGCGACCCTGTGCGTGCGGGCCGGCGTGAAGGCGATGGTGCTGCCG TCGCTGACCGCGCTGATGCCGGGGCAGGGCTTCCTGTCGCAGGTACGGAACATCGATCTCGAGGATCTGCTCGGCCGCGA CGCGGTGACGATCGATACGCCGCACGTCGAGGCGCTGCTGCGCGGCCGCGTCGTGATGGTGACCGGCGCGGGCGGCTCGA TCGGCTCCGAGCTGTGCCGGCAGATCCTGCGCTTCGCCCCTGCGCAGCTCGTTGCATTCGATCTCTCCGAATACGCGATG TACCGGCTGACCGAGGAATTGCGTGAGCGTTTTCCGGATCTGCCCGTGGTGCCGATCATCGGCGATGCGAAGGATTCGCT GCTGCTCGACCAGGTGATGTCGCGTCACGCGCCGCACATCGTGTTCCATGCGGCCGCCTACAAGCACGTGCCGTTGATGG AAGAGCACAACGCATGGCAGGCGCTGCGCAACAACGTGCTCGGCACCTATCGCGTGGCGCGGGCGGCGATCCGCCACGAC GTGCGTCACTTCGTGTTGATCTCGACCGACAAGGCGGTCAATCCGACCAACGTGATGGGCGCGAGCAAGCGTCTCGCGGA AATGGCCTGCCAGGCGTTGCAGCAGTCGAGCGGGCGTACGCAGTTCGAGACGGTGCGCTTCGGCAACGTGCTCGGCAGCG CGGGCAGCGTGATTCCGAAGTTTCAGCAGCAGATCGCGAAGGGCGGTCCGGTGACGGTCACGCACCCGGAGATCACGCGT TTCTTCATGACGATCCCGGAAGCGTCGCAGCTCGTGCTGCAGGCGTCGAGCATGGGGCATGGCGGCGAGATCTTCATTCT CGATATGGGCGAGCCGGTGAAGATCGTCGATCTCGCGTGCGACCTGATCCGCCTGTACGGTTTCTCGGAAGAACAGATTC GCATCGAGTTCACCGGGCTGCGGCCGGGCGAGAAGCTCTACGAGGAGTTGCTCGCGGATGACGAGGCGACGACGCGCACG CCGCACCCGAAGCTGCGGATCGCACGTGCGCGCGAAGTGCCGGACAATTTCCTCGACGAATTGCTGCCGTGGCTGATGCA GCATCGCGTGCTGTCCGACGACGAGGTACGGCGCGATCTGCGGCGCTGGGTGCCGGAATACCAGACGGCCGTTGCCCCTA TGTTGCAGAGCGTGCCGTCGGTGCGCGTCGTATCGAACGGGTGA Protein sequence : MLRSRASWLSLSAFLFDLTAVVAAWLFAYLVRFNGSVPHDFLSGALMALTWALPVYALMFRGFGLYRGLWVFASLPDLMR IAKAVAGGGVIVMIGAVMFQPQPIIPRSVLLVSPLMLFLAMGGARALYRATKEYYLYGGLVGKGKPVLVLGAGTAGASLA RELSRSGEWRLVGLLDDDVTKQGREIYGYKVLGSFNDLKHWTDAMKVEYAIIAIPSASVETQRRVATLCVRAGVKAMVLP SLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAM YRLTEELRERFPDLPVVPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHD VRHFVLISTDKAVNPTNVMGASKRLAEMACQALQQSSGRTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPEITR FFMTIPEASQLVLQASSMGHGGEIFILDMGEPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGEKLYEELLADDEATTRT PHPKLRIARAREVPDNFLDELLPWLMQHRVLSDDEVRRDLRRWVPEYQTAVAPMLQSVPSVRVVSNG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-83 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-83 | 42 |
