Gene Information

Name : Arth_3280 (Arth_3280)
Accession : YP_832756.1
Strain : Arthrobacter sp. FB24
Genome accession: NC_008541
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3687322 - 3688302 bp
Length : 981 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: nfa:nfa24340 putative ABC transporter substrate-binding protein

DNA sequence : 
ATGCCTAAATTTCTGTTTCGGTGCGCCAAAGTAGTCCGCCGAACCGGGGTCCTTCGCTCTGCTGGGGCCGCCGCCGTCGC
CCTTTCCCTTTGCCTGTCCCTCACCGCGTGCGGGGGTGCCGCCCCCGGCCAAGGCCCAGGCGATGAGAAGCCCGTGGTGC
TGACCACCTTCACCGTGCTGGCCGACGTGGCGCAGAACGTGGCAGGGGACAAGCTGCAGGTCGAATCCATCACCAAGGCC
GGCGCCGAAATCCACGGCTATGAGCCCACGCCCGGGGACATCCGGAAGGCCTCCAAGGCGGACCTGATCCTGGACAACGG
GCTGAACCTGGAGGCCTGGTTCGCCCAGTTCGTCGAGGGCCTGGATGTTCCGCACGCCGTGGTGAGCGAGGGCGTGAAGG
TGATGTCCATCAGCGAAGACTCCTATCAGGGCAAGCCGAACCCGCACGCCTGGATGTCGCCGGTGAACGTGCAGATCTAC
GTGGACAACATGGTGAAGGCCTTCTCCAAGCTCGATCCGGACAATGCCTCCACCTTCGAGGCCAACGGTGCCGCCTACAA
GGCCAAACTGCAGGCCGTGAAGGACGAGATGGTGCAGAAGCTCGCAACCGTCCCCGAGGCACAGCGTGCCCTGGTGACCT
GTGAAGGCGCCTTCTCCTACCTGACCCGCGACGCAGGCCTCAAGGAGGTCTACATCTGGGCCGTCAACGCCGAGCAGCAG
GCCACGCCGCAGCAGATCGCCCGGGCCATCGAATTCGTCAAGGCCAACAAGGTCCCGGCTGTCTTCTGCGAGTCCACGGT
GTCCGACGCCCCCATGCGCCAGGTGGTGGGAGCCACGGGAGCGAAATTCGGCGGAGTGCTCTACGTCGATTCCCTGTCTG
AGGCGGACGGTCCCGTGCCCACGTACCTGGACCTGATCCGGCACGACTCCAGGATCATCACCGAAGCACTCGCTGGTGCT
CAGGCGGGGGCGGCATCATGA

Protein sequence : 
MPKFLFRCAKVVRRTGVLRSAGAAAVALSLCLSLTACGGAAPGQGPGDEKPVVLTTFTVLADVAQNVAGDKLQVESITKA
GAEIHGYEPTPGDIRKASKADLILDNGLNLEAWFAQFVEGLDVPHAVVSEGVKVMSISEDSYQGKPNPHAWMSPVNVQIY
VDNMVKAFSKLDPDNASTFEANGAAYKAKLQAVKDEMVQKLATVPEAQRALVTCEGAFSYLTRDAGLKEVYIWAVNAEQQ
ATPQQIARAIEFVKANKVPAVFCESTVSDAPMRQVVGATGAKFGGVLYVDSLSEADGPVPTYLDLIRHDSRIITEALAGA
QAGAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-74 59
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-74 59
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-74 59
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-74 59
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-74 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arth_3280 YP_832756.1 periplasmic solute binding protein BAC0349 Protein 2e-74 59
Arth_3280 YP_832756.1 periplasmic solute binding protein BAC0439 Protein 9e-69 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arth_3280 YP_832756.1 periplasmic solute binding protein VFG0525 Protein 2e-74 59