Gene Information

Name : Acid_6806 (Acid_6806)
Accession : YP_828008.1
Strain : Candidatus Solibacter usitatus Ellin6076
Genome accession: NC_008536
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 8535780 - 8536568 bp
Length : 789 bp
Strand : -
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein

DNA sequence :
ATGTCGCTGCAATCTGAACGACTGCAACTACTCATGCAACGGCTGAGCCTCAACGAAATGGTGCATGGCTATCAAGCTCT
GGCAGAGCAGGCTGCCCAAAAGAACTTGCCGTACTGCGATTTCCTGGTGCTGGAGAGTGAAGCCCACGTGCGGCAGGAGC
GGAACATCAAAGTCCGCACACAACTGGCGGGCTTTCCGGACACTAAGCGGTTGGAGCAGTTTGACTTCAAGTTCCCGTCC
TCCATCGACGAGAAGAAAATCCGCGAACTAGCGAGCCTGCGTTTTCTGGAGCGCCATGAGAACGCTGTGTTCCTCGGACC
GCCCGGGGTGGGCAAGACCCACCTGGCGGTCTCGTTGGGAATGGAGGCCATTCGTCACGGCTTCAGTGTTTACTTTGTCA
GTTTGACGGATCTGCTCGATCGTCTGGTGCAGGCGCAGGCGGAGAATCGGATGCGCCGCAAGATGGCGCATCTGCGTAAG
TGCCGGCTTTTGATCCTCGATGAGATCGGCTACCGCAGTTTGGATAAACAGGCGACCACCTGTCTGTTCCAGTTGATCAG
CGAACGTTACGAACGCGGCTCGATGATTCTGACCTCCAACAAGAGCTACGGCGAGTGGGGATCGATCTTTCAGGACAACG
TGATCGCCAGCGCGATTCTGGATCGGCTGTTGCACCACTCCCACACCGTCAACATCAAGGGCGAAAGCTACCGGCTGAAG
GAGAAACGCAAGGCCGGCGTATGGACACAGTCCGCCCCCGAATCGGTCAGTTCCGGAGGTGGCCAATGA

Protein sequence :
MSLQSERLQLLMQRLSLNEMVHGYQALAEQAAQKNLPYCDFLVLESEAHVRQERNIKVRTQLAGFPDTKRLEQFDFKFPS
SIDEKKIRELASLRFLERHENAVFLGPPGVGKTHLAVSLGMEAIRHGFSVYFVSLTDLLDRLVQAQAENRMRRKMAHLRK
CRLLILDEIGYRSLDKQATTCLFQLISERYERGSMILTSNKSYGEWGSIFQDNVIASAILDRLLHHSHTVNIKGESYRLK
EKRKAGVWTQSAPESVSSGGGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 3e-40 47
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-53 45
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-53 45
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-53 45
unnamed CAA21402.1 - Not tested HPI Protein 2e-53 45
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 7e-53 45
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-53 45
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-53 45
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-53 45
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-53 45
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 5e-54 45
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-53 45
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-53 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid_6806 YP_828008.1 IstB ATP binding domain-containing protein VFG1460 Protein 2e-40 47
Acid_6806 YP_828008.1 IstB ATP binding domain-containing protein VFG1627 Protein 7e-54 45
Acid_6806 YP_828008.1 IstB ATP binding domain-containing protein VFG1606 Protein 7e-54 45
Acid_6806 YP_828008.1 IstB ATP binding domain-containing protein VFG1663 Protein 4e-53 45
Acid_6806 YP_828008.1 IstB ATP binding domain-containing protein VFG1515 Protein 7e-54 45