Gene Information

Name : Acid_0239 (Acid_0239)
Accession : YP_821537.1
Strain : Candidatus Solibacter usitatus Ellin6076
Genome accession: NC_008536
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 321443 - 324115 bp
Length : 2673 bp
Strand : +
Note : PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N termi

DNA sequence :
ATGGCGAATATTTTGAAGGCGATCGTTGGCAGGCTGAACGATACCATGCGCACGACGCTTGAGGGAGCGGCCGGCCTGTG
CCTGGCACGGACCCATTATGACGTTGAGATCGAACACGTCCTGACCAAACTGCTGGAAGCCGGCGGCACGGATTTCGCCG
GCATCCTGCAGCACTTCGACGTGGATAAGACGCGGCTCTCCGGCGAGCTCGCGCGCAGCCTCGACAAACTCAAGAGCGGC
AACGCGCGCACGCCCGCGTTCAGTCCGTCGCTGCTCCGCATGCTTCGCGAGGCCTGGACCGTCGGATCGCTGGAGTTTGG
CGCCGGGCAGGTGCGCTCCGGCACGGCCATCCTGGCGCTGGTGTCGGATGCCGAGCTGTCGCGGCTGGTCCACGATGTCA
GCAAGGAGTTCCGCAAGATCGAGTCCGAGGCGTTGCGGAAAGTACTGCCGGCGATCCTCGAGGATTCGCGCGAATCGTCC
GCGGAAGCGGACGCGATGCCGGCTTCGGGCGCGAGCTCGACGGGCGCCCCGAAGGCGGGCGGCAAGACGCCCAACCTGGA
TCAATTCACCGTGAACCTCACCGAAAACGCGCGCCAGGGAAAGACCGACACGGTGCTGGGCCGGGATTCCGAGATCCGTC
AGATGGTGGACATCCTCACCCGGCGGCGGCAGAACAACCCGATCCTCACCGGAGAAGCGGGCGTTGGCAAAACCGCCGTG
GTGGAGGGTTTCGCGCAGCGGATCGTGGCCGGCGACGTGCCGCCCAGTCTGCGTAACGTCACCGTCCGCTCGCTTGACCT
GACGCTCTTGCAGGCCGGCGCCGGAATTAAAGGCGAGTTCGAGAACCGTCTCAAGAGCCTGGTGGAGGAGGTCAAGTCGT
CGCCCACACCGATCATTCTATTCATCGACGAAGCCCACACCATGATCGGAGCCGGCGGGACCGCCGGACAAAACGACGCA
GCCAACATTCTGAAGCCTGCGCTGGCGCGCGGCGAACTGCGCACCATCGCCGCCACTACCTGGTCGGAATACAAGAAGTA
CTTCGAAAAGGACCCGGCGCTGGCGCGGCGCTTCCAGGTGGTCAAGGTGGAGGAGCCCACGGAAGCCAAGTGCCAGGTGA
TGCTGCGCGGCCTGGTTCCGGTGTTGGAGAAGCACCACAACGTGCGCATCCTCGACGAGGGCTTGGTCGCGGCAGTCAAG
TTCTCGCACCGCTATCTCGCCGACCGGCAGCTTCCCGATAAGGCCGTGAGCGTACTCGACACGGCATGCGCGCGCCTTTC
CCTTGGGCAGAACGCCACGCCGCCTGCCATCGAAGACGCCATCCGCCAGATCGACGATTGCACGGTGCAGACGCGCATTC
TGGAGCGGGAATCCGCGCTGGGAGCAGACCATGCCGAGGGTTTGGCGGCGCTGGCCAAACAGAAGGCGGCAGAGGAAGGC
CGCCTGGCGGATTTACAGCAGCGCTGGCAGAAGGAGCGCGACTTGGTCGGCAAGATCCGCGAGGTCCGCGGCAAGCTGGA
GACCGCAGCCGGCGCACCCGTCGCGGCAACCGAAGGCGCCGCCGCAGCGGTGCAAACCGCCGTCGATCCGGATGCCCTGC
GTGCGGAACTGGCTGGCTTGAATGCCGAACTGGAACAGCTTCAGGGTGAGAGTCCGCTGATGCGGGTCTGCGTGGATGGA
CAGATCGTGGGCGAGGTGGTGGCCGCTTGGACGGGCATTCCGATCGGCAAGATGCTCCGCGATGAGATGCAGTCGATCCT
CTCGCTGGAATCGCACCTGGGCCGCCGGGTAATCGGGCAGGATCACGCGCTCGGCATGCTCAGCGAGCGGATTCGTACCT
CGAAAGCCGGGTTGGAAGATCCCGGCAAACCGGTCGGCGTTTTCCTGCTGGTGGGACCGAGCGGCGTCGGCAAGACCGAG
ACCGCGACGGCGATGGCCGACCTGCTCTACGGCGGCGAGCGCAACATGATCACCATCAACATGTCGGAGTTCCAGGAAGC
GCATACGGTGTCCACGCTGAAGGGCTCGCCTCCCGGCTATGTCGGTTATGGCGAGGGCGGCGTCCTGACCGAAGCCGTGC
GGCGCCGGCCGTATTCGGTGGTGCTGCTGGACGAGGTGGAGAAGGCGCATCCGGATGTTCTGGAGCTTTTCTTCCAGGTA
TTCGACAAAGGCAAGATGGAAGATGGCGAAGGCCGTGAGATCGATTTCAAAAACACCATCATCATCCTCACATCCAACGC
CGCCACAGATACTCTGATGAAGCTCACCGCGGACCCGGAAACCATGCCGAGTCCCGCCGGGCTGGTGAAGGCCATCAAGC
CGGAGTTGAATAAAGTCTTCAAACCGGCCTTCCTGGGACGCCTGGTGATCATTCCCTACTTTCCTGTTCGCGACGAAGCC
TTGAAGATGATCGTCCGCCTGAAGCTGGGGAAAATTCAGCGCCGCATTCAGGAGACGCACCGCATCGCCATCACTTATGA
CGAGCCGCTTATCGAAGAAGTGGCAAAGCGCTGCACGGAAGTCGAGAGCGGAGCCCGCAACGTAGACAACATTCTGACCA
ATACTTTGTTGCCGGAGATCTCGCGCCGCATCCTAGGGCATCTCGCGGAACGGCAAAAGCCGGCGCCGATTCACGTCACG
ATTGGCGGCAGCGGAGAGTTTGTGTACCAATAA

Protein sequence :
MANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFDVDKTRLSGELARSLDKLKSG
NARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILALVSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESS
AEADAMPASGASSTGAPKAGGKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIILFIDEAHTMIGAGGTAGQNDA
ANILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQVVKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVK
FSHRYLADRQLPDKAVSVLDTACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEG
RLADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGLNAELEQLQGESPLMRVCVDG
QIVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQDHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTE
TATAMADLLYGGERNMITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQV
FDKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVFKPAFLGRLVIIPYFPVRDEA
LKMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTEVESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVT
IGGSGEFVYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-176 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid_0239 YP_821537.1 ATPase VFG2076 Protein 0.0 53
Acid_0239 YP_821537.1 ATPase VFG2084 Protein 7e-161 45