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Name : dexB (SPD_0311) Accession : YP_815828.1 Strain : Streptococcus pneumoniae D39 Genome accession: NC_008533 Putative virulence/resistance : Unknown Product : glucan 1,6-alpha-glucosidase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : 3.2.1.70 Position : 310716 - 312323 bp Length : 1608 bp Strand : + Note : equivalent gene in S.pneumoniae TIGR4 = SP0342; equivalent gene in S.pneumoniae R6 = spr0310; identified by match to protein family HMM PF00128 DNA sequence : ATGCAAGAAAAATGGTGGCATAATGCCGTAGTCTATCAAGTCTATCCAAAGAGTTTTATGGATAGTAATGAAGATGGAGT TGGTGATTTGCCAGGAATTACCAGTAAGTTGGACTATCTAGCCAAGCTAGGAATCACAGCAATTTGGCTTTCTCCCGTTT ATGACAGCCCTATGGATGATAATGGCTATGATATTGCTGATTATCAAGCGATTGCGGCTATTTTTGGAACCATGGAGGAC ATGGATCAGCTGATTGCAGAAGCTAAGAAGCGTGATATCCGTATCATCATGGACTTGGTGGTCAATCATACCTCGGATGA GCATGCCTGGTTTGTAGAGGCCTGTGAAAATCCTAATAGCCCTGAGCGAGACTACTATATCTGGCGGGATGAGCCTAACG ATTTAGATTCTATTTTTAGTGGATCTGCTTGGGAATACGATGAAAAATCTGGTCAATACTATCTCCACTTTTTCAGCAAG AAACAGCCGGATCTCAATTGGGAAAATGAAAAACTTCGCCAGAAAATTTATGAGATGATGGACTTCTGGATTGATAAAGG TATTGGTGGTTTCCGTATGGATGTTATTGACATGATTGGCAAAATTCCTGACGAGAAGGTAGTCAATAATGGTCCTATGC TCCATCCCTATCTCAAGGAAATGAATCAGGCGACCTTTGGAGATAAGGATCTCTTGACAGTAGGGGAGACTTGGGGAGCA ACGCCAGAGATTGCCAAGCTCTACTCTGATCCAAAGGGGCAAGAATTGTCTATGGTCTTCCAGTTTGAACATATCGGTCT TCAGTATCAGGAAGGTCAGCCTAAATGGCACTATCAAAAAGAGCTGAATATCGCTAAGTTAAAAGAAATCTTCAACAAAT GGCAGACAGAGTTAGGAGTTGAGGACGGTTGGAATTCCCTCTTCTGGAACAATCATGACCTCCCTCGTATTGTCTCAATC TGGGGAAATGACCAAGAATACCGCGAAAAATCTGCCAAAGCCTTTGCAATCTTGCTTCATCTTATGAGAGGAACTCCTTA TATCTACCAAGGTGAGGAGATTGGGATGACCAACTATCCGTTTGAAACACTGGATCAAGTAGAAGATATTGAATCTCTCA ACTATGCGCGTGAGGCTCTTGAAAAAGGTGTTCCGATTGAAGAAATCATGGACAGTATCCGTGTTATTGGACGTGACAAT GCCCGTACCCCTATGCAATGGGACGAGAGCAAAAACGCTGGTTTCTCAACAGGTCAACCTTGGTTGGCGGTTAATCCAAA TTACGAGATGATCAACGTCCAAGAAGCGCTGGCAAATCCAGATTCTATTTTCTATACCTATCAGAAACTGGTCCAAATTC GCAAGGAGAATAGCTGGCTAATTCGAGCTGACTTTGAATTGCTTGATACGGCTGATAAGGTCTTTGCTTATATACGTAAG GATGGCGACCGTCGCTTCCTAGTTGTGGCTAACTTGTCCAATGAAGAGCAAGACTTGACAGTAGAAGGAAACGTCAAATC TGTCTTGATTGAAAACACCCTAGCTCAAGAAGTCTTTGAAAAACAAATCTTAGTTCCATGGGATGCTTTCTGTGTGGAAT TACTATAA Protein sequence : MQEKWWHNAVVYQVYPKSFMDSNEDGVGDLPGITSKLDYLAKLGITAIWLSPVYDSPMDDNGYDIADYQAIAAIFGTMED MDQLIAEAKKRDIRIIMDLVVNHTSDEHAWFVEACENPNSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSK KQPDLNWENEKLRQKIYEMMDFWIDKGIGGFRMDVIDMIGKIPDEKVVNNGPMLHPYLKEMNQATFGDKDLLTVGETWGA TPEIAKLYSDPKGQELSMVFQFEHIGLQYQEGQPKWHYQKELNIAKLKEIFNKWQTELGVEDGWNSLFWNNHDLPRIVSI WGNDQEYREKSAKAFAILLHLMRGTPYIYQGEEIGMTNYPFETLDQVEDIESLNYAREALEKGVPIEEIMDSIRVIGRDN ARTPMQWDESKNAGFSTGQPWLAVNPNYEMINVQEALANPDSIFYTYQKLVQIRKENSWLIRADFELLDTADKVFAYIRK DGDRRFLVVANLSNEEQDLTVEGNVKSVLIENTLAQEVFEKQILVPWDAFCVELL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 1e-118 | 50 |
