Gene Information

Name : LGAS_0064 (LGAS_0064)
Accession : YP_813914.1
Strain : Lactobacillus gasseri ATCC 33323
Genome accession: NC_008530
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 78181 - 78888 bp
Length : 708 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAAAAGATTTTAGTCGTTGACGATGAAAAACCAATTTCTGACATTATTAAATTTAACTTGACTAAGGAAGGCTT
TGATGTCGACACTGCTTATGACGGCGAAGAAGCGGTTAAAAAAGTTGATGAATATGATCCAGACTTGATGATTCTAGATC
TAATGTTGCCTAAAAAAGATGGCCTAGAAGTTGCACGGGAAGTACGTCAAACTCACGATATGCCAATTATTATGGTAACT
GCGAAAGATACTGAAATTGATAAGGTATTAGGACTTGAGATGGGTGCAGATGACTATGTTACTAAGCCTTTCTCTAATCG
AGAACTAGTTGCTAGAGTAAAGGCAAACCTACGTAGACGTGATTTAACCCAAAAAGCTACTGAAGATGATGAAGATAAAA
ATATTACTATTAGCAATTTGGTAATTATGCCTGAAGCCTATATGGTAGAAAAAAATGGCGAAAAAATTGAATTAACACAT
CGTGAATTTGAATTACTTCATTATCTAGCTCAGCATATGGGTCAAGTGATGACTAGGGAACACTTGCTGCAAACCGTTTG
GGGCTATGATTACTTCGGGGATGTTAGAACTGTTGACGTAACTGTTAGACGTTTACGTGAAAAAATCGAAGATAATCCGA
GTTCGCCAACAATTTTAGTTACACGGCGTGGAGTAGGATATTACGTTAAAAACCCATCAGATGAATAA

Protein sequence : 
MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT
AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDLTQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTH
REFELLHYLAQHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVKNPSDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-28 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_012469.1.7685629. Protein 8e-58 66
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 5e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 2e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 3e-45 53
LGAS_0064 YP_813914.1 DNA-binding response regulator HE999704.1.gene2815. Protein 3e-37 50
LGAS_0064 YP_813914.1 DNA-binding response regulator CP000647.1.gene4257. Protein 2e-30 48
LGAS_0064 YP_813914.1 DNA-binding response regulator CP000034.1.gene3834. Protein 6e-31 48
LGAS_0064 YP_813914.1 DNA-binding response regulator BAC0533 Protein 2e-30 48
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002695.1.915041.p Protein 6e-31 48
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_012469.1.7686381. Protein 7e-33 47
LGAS_0064 YP_813914.1 DNA-binding response regulator CP001138.1.gene4273. Protein 3e-30 47
LGAS_0064 YP_813914.1 DNA-binding response regulator CP004022.1.gene3215. Protein 8e-30 47
LGAS_0064 YP_813914.1 DNA-binding response regulator AE000516.2.gene3505. Protein 4e-29 46
LGAS_0064 YP_813914.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 7e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 4e-30 45
LGAS_0064 YP_813914.1 DNA-binding response regulator AE016830.1.gene1681. Protein 8e-34 44
LGAS_0064 YP_813914.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 1e-30 44
LGAS_0064 YP_813914.1 DNA-binding response regulator AE015929.1.gene1106. Protein 1e-23 43
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_011595.7057856.p0 Protein 3e-24 43
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_010400.5986590.p0 Protein 1e-23 43
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_010410.6002989.p0 Protein 3e-24 43
LGAS_0064 YP_813914.1 DNA-binding response regulator AM180355.1.gene1830. Protein 1e-30 42
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 3e-31 41
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 3e-31 41
LGAS_0064 YP_813914.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 5e-30 41
LGAS_0064 YP_813914.1 DNA-binding response regulator CP004022.1.gene1676. Protein 2e-20 41
LGAS_0064 YP_813914.1 DNA-binding response regulator NC_002695.1.916589.p Protein 1e-22 41
LGAS_0064 YP_813914.1 DNA-binding response regulator BAC0596 Protein 2e-21 41
LGAS_0064 YP_813914.1 DNA-binding response regulator BAC0039 Protein 1e-22 41
LGAS_0064 YP_813914.1 DNA-binding response regulator CP001138.1.gene2239. Protein 2e-21 41
LGAS_0064 YP_813914.1 DNA-binding response regulator CP000034.1.gene2186. Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGAS_0064 YP_813914.1 DNA-binding response regulator VFG1702 Protein 2e-28 42
LGAS_0064 YP_813914.1 DNA-binding response regulator VFG1389 Protein 1e-26 42
LGAS_0064 YP_813914.1 DNA-binding response regulator VFG1563 Protein 3e-28 41