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Name : lysS (LGAS_0280) Accession : YP_814126.1 Strain : Lactobacillus gasseri ATCC 33323 Genome accession: NC_008530 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 316838 - 318352 bp Length : 1515 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGGCAAAGAATGAAATGAACGACCAACTAATTGTTCGTCGTGAAAAAATGGACGAAATGCGTGAAAATGGCATTGAACC TTTTGGTGTAAGAAAGTTCGATCGTCAAGATTTAGCTCGTACTTTAAATGAAAAGTATAGTAAAGAAGATAAAGATGAAT TAAATGCAGATATGCCTACGACCAAAATTGCAGGTCGTATGCTTGCAAAACGTGGTAAGGGTAAAGTAGGTTTTGCTGAT CTTTATGACCGTACTGGTAAGATTCAAATCTATGTACGTAAAGATATTGTTGGCGAAGACAACTACAAGATTTTTAAGAA ATCAGATATTGGTGACTTCTTAGGTATTGATGGCGAAGTAATGAAAACTGATACTGGTGAGTTAACTATTCGTGCAACTC ACGTTACTTTCTTATCTAAGGCTCTTCGTCCCTTACCTAATAAATGGGATGGTTTAAAAGATGTTGAACAAATCTATCGT CAACGCTATCTTGATTTGATTACTAATCACGAAAGTTACATGCGTTTTGTTCATCGTACTCAAATTATTCAAGCTATTCG TAACTACTTAAATAAGCAAGACTTCTTGGAAGTTGAAACTCCAGTTCTTCACAATATTCCAGGTGGTGCTGAAGCACGTC CATTTATTACTCACCACAACGCTTTAGATATTGATCTTTATATGAGAATCGCTTTGGAACTTCCATTGAAGCGTTTGATT GTCGGTGGTATGGAGAGAGTTTATGAAATTGGTCGAGTATTCAGAAACGAAGGTGTTGATACTCGCCACAATCCTGAATT TACTGAGCTTGAAACTTATGCTGCTTACTGGGATTTCCACGATGTCATGGATGAAGCAGAAGAAATTATCAGAGCAGCTG CTAAAGTTGTTTCTCCAGACGGTAAGATTAACTACCAAGGTACTGATATTGACTTAGGTAAGCCATTCCGCCGTGTTCAT ATGGTTGACCTAATTAAGGAAAAGACTGGTGTCGATTTCTGGAAAGAAATGACTGACGAAGAAGCTAAGAAGATCGCCGA AGAACATGGAATTCATACTGAACCATTTTGGAAAGTTGGTCATGTAATTAATGCTTTCTTTGATGAATTTTGTGAGAAGA CTATTGTTGATCCAACCTTTGTGTATGGTCACCCTGTAGAAATTTCACCACTTGCTAAAAAGAATGCAGATGATCCAAGA TTTACTGATCGTTTCGAAATCTTTATTTTAGGAATGGAATACGGAAATGCCTTTTCAGAGTTAAATGATCCAGTTGATCA ACGTCACCGTTTTGAAGAACAAATGGAAGAACGCGAAGCTGGTAACGATGAAGCTGATATGATTGATGAAGATTATATCC GTGCTATGGAATTCGGTATGCCTCCTACAGGTGGTTTAGGTATCGGTATCGACCGTTTGGTAATGCTTTTAACTGACGCT CCAGCTATCCGTGATGTATTGCTCTTCCCAACAATGCGTCCTGAAAAGGTTGAAGATGTTGATGCAGAAGTATAA Protein sequence : MAKNEMNDQLIVRREKMDEMRENGIEPFGVRKFDRQDLARTLNEKYSKEDKDELNADMPTTKIAGRMLAKRGKGKVGFAD LYDRTGKIQIYVRKDIVGEDNYKIFKKSDIGDFLGIDGEVMKTDTGELTIRATHVTFLSKALRPLPNKWDGLKDVEQIYR QRYLDLITNHESYMRFVHRTQIIQAIRNYLNKQDFLEVETPVLHNIPGGAEARPFITHHNALDIDLYMRIALELPLKRLI VGGMERVYEIGRVFRNEGVDTRHNPEFTELETYAAYWDFHDVMDEAEEIIRAAAKVVSPDGKINYQGTDIDLGKPFRRVH MVDLIKEKTGVDFWKEMTDEEAKKIAEEHGIHTEPFWKVGHVINAFFDEFCEKTIVDPTFVYGHPVEISPLAKKNADDPR FTDRFEIFILGMEYGNAFSELNDPVDQRHRFEEQMEEREAGNDEADMIDEDYIRAMEFGMPPTGGLGIGIDRLVMLLTDA PAIRDVLLFPTMRPEKVEDVDAEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-110 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_814126.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-111 | 47 |
