Gene Information

Name : LGAS_1261 (LGAS_1261)
Accession : YP_815065.1
Strain : Lactobacillus gasseri ATCC 33323
Genome accession: NC_008530
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1258670 - 1259380 bp
Length : 711 bp
Strand : -
Note : -

DNA sequence : 
ATGCTAAAGATATTAATGGTTGAAGATGACAATTCTGTTGCAGAAATGATGAAGATGTTCTTCAGTAAAGAACAATGGGA
AGTAGATATAGCTAAGGATGGTATAGAAGCTGTTGAGATGTTTAAAGCGCATCCAGATTCTTATGACATTGTAACGTTAG
ATCTTAACTTACCTAGAAAGGATGGAATGGAAGTAGCTAAAGAAATAAGGGCTATTTCTCTTTCAATACCAATCATTATG
TTAACTGCACGTGACTCAGAAACTGATCAAATTTTGGGTTTGGGCATTGGTGCAGATGAATATGTTACTAAACCATTCAG
TCCATTAGCACTAATTGCCCGCATTAAAGCTTTATATCGAAGAAGTCGTATAGAAAAAGATATGCATGCTTCTAATGGCG
TAAAGTATGATGTAATTACTAAGCATCTAAAGATTTCAAAAGATCGAAGAGAAGTGCGCTTTGATGATAATATTGTTGAA
GGCTTAACTCCAAAGGAATTTGACTTACTTTACACGATGGCTCAAAAACCAAAACAAGTTTTTTCAAGAGATAAGCTTTT
AGAATTAGTTTGGGGATATGAATTCTTTGGCGAAGAAAGAACTGTTGATGCTCATATCAAAAAATTACGGCAAAAACTAG
AAAAAGCTGGTCCTCAAGTGGTGCAAACAGTTTGGGGCGTGGGTTATAAGTTTGACGATTCTGAGGTATAG

Protein sequence : 
MLKILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRKDGMEVAKEIRAISLSIPIIM
LTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSRIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVE
GLTPKEFDLLYTMAQKPKQVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKAGPQVVQTVWGVGYKFDDSEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-37 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_012469.1.7685629. Protein 1e-39 45
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 2e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 2e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 1e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator HE999704.1.gene2815. Protein 3e-40 42
LGAS_1261 YP_815065.1 DNA-binding response regulator AE000516.2.gene3505. Protein 6e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGAS_1261 YP_815065.1 DNA-binding response regulator VFG1563 Protein 1e-37 42
LGAS_1261 YP_815065.1 DNA-binding response regulator VFG1702 Protein 1e-37 42