Gene Information

Name : LACR_1090 (LACR_1090)
Accession : YP_809047.1
Strain : Lactococcus lactis SK11
Genome accession: NC_008527
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1030439 - 1031125 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGACTTATCATGTATTAATTGTTGAAGATGAACCTAGTATTTCTGATTATGTTAAAAAAGAATTAGTCTTTGAAGATTA
TCAAGTATCAACAGCTTTTGATGGTCTTGCTGCCTTAGAGGTGTTTGAGCAAGCAAAACCAGCGGTAGATGTCGTCTTGC
TTGATTGGATGATTCCCAAATTAGATGGTTTGACCGTCTTACGACGCATGAAGAAAATTCAACCCAACACACCGATTATA
TTTTTAACGGCGCGTGATTATATTGGTGATAAAGTTGCTGGTTTAGATGCTGGAGCGGATGATTATATCACTAAACCTTT
TGAAATTGAAGAACTTTTAGCTCGTCTGAGACTTATCTTTAGAAAGTGGTCAACTTCTTGCTCAAAAGTATATGAACTTG
ATTATCTAAAGGTAGATTTAACGGCTCATACAACGGAAGTAGCGGGAAAAACAGTGAATTTGACTCAAAGAGAATTTGCT
TTGTTAAGTTATTTTTTAGAACATCGTGGTATAGTGGTTAGTCGAGCAGATATTTTGGATGATGTTTGGGGAATGGATTT
TGATGGTCAGGAAAATACAGTAGATGCCTATGTGCGTTATCTGCGTGCTAAAATTGATCTTCCAAATCATAAATCTCTGA
TTGAAACAGTTCGTGGAGTAGGCTATCGCTTGAATGACGAAGGTTGA

Protein sequence : 
MTYHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGLTVLRRMKKIQPNTPII
FLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWSTSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFA
LLSYFLEHRGIVVSRADILDDVWGMDFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLNDEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LACR_1090 YP_809047.1 DNA-binding response regulator BAC0197 Protein 3e-29 43
LACR_1090 YP_809047.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 2e-28 42
LACR_1090 YP_809047.1 DNA-binding response regulator BAC0638 Protein 6e-22 42
LACR_1090 YP_809047.1 DNA-binding response regulator AE015929.1.gene1106. Protein 5e-22 41
LACR_1090 YP_809047.1 DNA-binding response regulator NC_012469.1.7685629. Protein 1e-26 41
LACR_1090 YP_809047.1 DNA-binding response regulator HE999704.1.gene1528. Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LACR_1090 YP_809047.1 DNA-binding response regulator VFG1386 Protein 2e-35 45
LACR_1090 YP_809047.1 DNA-binding response regulator VFG0596 Protein 7e-28 41