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Name : LSEI_0326 (LSEI_0326) Accession : YP_805628.1 Strain : Lactobacillus casei ATCC 334 Genome accession: NC_008526 Putative virulence/resistance : Virulence Product : PTS system ascorbate-specific transporter subunit IIC Function : - COG functional category : S : Function unknown COG ID : COG3037 EC number : - Position : 327084 - 328370 bp Length : 1287 bp Strand : + Note : membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr DNA sequence : ATGGTTGTGGTTAACTTTATTATTCAAAATATTCTGACTCAGGCAGCCATCACCATTGCGTTAATCGCGATGCTTGGCTT ACTTCTACAACGCAAGTCCTTTGGCGCGGTCCTAACTGGAACCTTCAAGACACTGCTGGGATTTCAAGTATTATCAGCAG GGTCCGCCATTATTGTCACAGCACTGACGTATTTCGGAAAGATTTTTCAACATGGTTTTCACCTAAAAGGGGTTGTACCC AGCATTGAGGCGATCAATGGTCAAGCCATGAATACGCTGGGGTTGGGAAATGAAATTGCCTTAACCTTTTTGGGCATCTT CATTGTCAACATTATCATTGCGCGGTTCTCGCCATGGAAATATATTTTTCTAACCGGACAGGCGCTGTTGTGGATGTCGA CCATGACGGTTGTCGGCGGCAAGATAGCTGGCTTTAATTCAGTTGTGACCATTGCTGTCGGTAGTGTCATCGGTGGGATT TTCGCGGTGGCCATGCCAGCCATTGCTCAGCCTTTTGTTCGTAAGATTACCAAGGGCGATGCCATTGCTTTAGGACACTT TTGTACGATCGGCTACATGGTAGAAGCAGGCGCCGCTTGGATCTTCGGTGAACGTGGCGAAAAGAAACACTCGATTGAAG ACATCAAGTTACCAAAGTACATGGAATTCTTGCAAGACACGTATCTCTCTGTTGCTGTTGTGATGGTGCCATTATTTATG ATCACCGCGGCTTTTGCAGGCCCTAAGTACGCCGGTAACGGCACGAGTCTGAACTATATCATGAATGCCTTCATGATGGG CATTCAGTTCGTTGTCGGGGTCTATGTCCTGCTTGCGGGCGTTCGGCTCTTACTTGGTGAAATCGTTCCGGCTTTCCGTG GTATTGCGATGAAACTGGTACCAAATGCGAAACCAGCACTTGACTGTCCAGTCTTGTTCCCATTCTCACCAAACGCGGTC ATCTTAGGCTTCATTACGACAACTATTGGGACCGTCATTGGCATGTTCTTGATGCCTGTTTTCGGACTCGCGGTCATTCT GCCGGGGATGTTAACTAACTTCTTCGCTGGCGGGACTGCAGGGATCTTCGGAAACGTTGTCGGCGGCCGCCGCGGGGCCA TCATTGGCGGCATTATCCACGGCCTGTTCATCACCTTGTTGCCAGCGCTGCTAGTCACGGCCTTGACCTCGTTTGGCTTC GTGAATGCTTCGGCAACTGACTCCGATACGATCGTGGCCATGCTGATGTATGCCTGGATCCTAACGCCGATTCTTAAAGC AGTTTAA Protein sequence : MVVVNFIIQNILTQAAITIALIAMLGLLLQRKSFGAVLTGTFKTLLGFQVLSAGSAIIVTALTYFGKIFQHGFHLKGVVP SIEAINGQAMNTLGLGNEIALTFLGIFIVNIIIARFSPWKYIFLTGQALLWMSTMTVVGGKIAGFNSVVTIAVGSVIGGI FAVAMPAIAQPFVRKITKGDAIALGHFCTIGYMVEAGAAWIFGERGEKKHSIEDIKLPKYMEFLQDTYLSVAVVMVPLFM ITAAFAGPKYAGNGTSLNYIMNAFMMGIQFVVGVYVLLAGVRLLLGEIVPAFRGIAMKLVPNAKPALDCPVLFPFSPNAV ILGFITTTIGTVIGMFLMPVFGLAVILPGMLTNFFAGGTAGIFGNVVGGRRGAIIGGIIHGLFITLLPALLVTALTSFGF VNASATDSDTIVAMLMYAWILTPILKAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF8 | AAK27335.1 | unknown | Not tested | PAI-I AL862 | Protein | 4e-60 | 44 |
| unnamed | CAC39291.1 | hypothetical protein | Not tested | LPA | Protein | 3e-60 | 44 |
| vpeC | ADD91725.1 | putative PTS system-specific IIC component VpeC | Virulence | PAI-I AL862 | Protein | 3e-60 | 44 |
