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Name : LSEI_2808 (LSEI_2808) Accession : YP_807964.1 Strain : Lactobacillus casei ATCC 334 Genome accession: NC_008526 Putative virulence/resistance : Virulence Product : DNA-binding response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 2791109 - 2791822 bp Length : 714 bp Strand : - Note : - DNA sequence : ATGGCGAAAAAAATCCTGGTCGTTGACGATGAGAAGCCTATCTCTGATATCGTCAAGTTTAATTTGGATAAAGAAGGTTA CGATGTCGTAACCGCTTATGATGGCGAAGAAGCCTTGAAAAAAGTCGAAGCAGAGTCACCCGACTTAATTTTACTTGATC TGATGTTACCAAAAATTGATGGGCTTGAAGTCGCCCGACAAATTCGTAAAGAACATGACACCCCAATTATTATGCTGACA GCTAAGGACTCAGAAATTGATAAAGTGCTCGGGTTGGAACTCGGTGCTGACGATTACGTCACCAAACCATTTTCCAATCG TGAACTGGTGGCACGTGTCAAAGCTAACTTGCGCCGAACCGCATCATCCAACGCAGCCAGCAATGAAGAAGACGAAGCAA ACAAGGAATTAGAAGTCGGAGATCTAACGATTCACCCCGATGCCTATACAGTCTCTAAACGCGGTGAAAACATCGAATTA ACCCACCGTGAATTTGAGCTGCTGCACTACCTTGCTCGACACCTTGGGCAGGTCATGACCCGTGAGCATCTGCTGCAAAC CGTTTGGGGCTACGATTACTTTGGCGATGTCCGCACCGTCGATGTGACCGTCCGCCGTCTGCGTGAAAAAATCGAAGACA ACCCGTCTCACCCTGAATGGCTGGTGACTCGACGCGGTGTCGGTTACTATCTGCGGAATCCCGATGCTGAATAA Protein sequence : MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLEVARQIRKEHDTPIIMLT AKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTASSNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIEL THREFELLHYLARHLGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD42044.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 1e-32 | 42 |
| c3565 | NP_755440.1 | response regulator | Not tested | PAI I CFT073 | Protein | 1e-32 | 42 |
| ef0091 | AAM75294.1 | EF0091 | Not tested | Not named | Protein | 9e-33 | 41 |
| EF0571 | NP_814337.1 | DNA-binding response regulator | Not tested | Not named | Protein | 1e-32 | 41 |
| kdpE | YP_039536.1 | response regulator protein | Not tested | Type-II SCCmec | Protein | 4e-25 | 41 |
| kdpE | NP_370594.1 | transcriptional regulator kdpE | Not tested | Type-II SCCmec | Protein | 4e-25 | 41 |
| kdpE | NP_373306.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 4e-25 | 41 |
| kdeP | YP_190033.1 | DNA-binding response regulator KdeP | Not tested | Type-II SCCmec | Protein | 4e-25 | 41 |
| SH0031 | YP_251946.1 | hypothetical protein | Not tested | SCCmec | Protein | 1e-25 | 41 |
| kdpE | BAA82188.1 | KDP operon transcriptional regulatory protein KdpE | Not tested | Type-II SCCmec | Protein | 3e-25 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_012469.1.7685629. | Protein | 1e-71 | 72 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002952.2859905.p0 | Protein | 3e-55 | 55 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_007793.3914279.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_007622.3794472.p0 | Protein | 2e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002745.1124361.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_009782.5559369.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002951.3237708.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_003923.1003749.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002758.1121668.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_009641.5332272.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_013450.8614421.p0 | Protein | 1e-55 | 54 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | HE999704.1.gene2815. | Protein | 9e-50 | 52 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_012469.1.7686381. | Protein | 3e-44 | 49 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AE016830.1.gene1681. | Protein | 4e-48 | 48 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | FJ349556.1.orf0.gene | Protein | 3e-41 | 48 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AF155139.2.orf0.gene | Protein | 1e-39 | 47 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP001918.1.gene5135. | Protein | 2e-31 | 46 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP004022.1.gene3215. | Protein | 4e-39 | 46 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AF162694.1.orf4.gene | Protein | 3e-36 | 45 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | BAC0533 | Protein | 3e-35 | 45 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP000034.1.gene3834. | Protein | 9e-36 | 45 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP000647.1.gene4257. | Protein | 3e-35 | 45 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002695.1.915041.p | Protein | 9e-36 | 45 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP001138.1.gene4273. | Protein | 2e-35 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AE000516.2.gene3505. | Protein | 2e-37 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_010079.5776364.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002952.2859858.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_007622.3794948.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_003923.1003417.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_013450.8614146.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002951.3238224.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_007793.3914065.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002758.1121390.p0 | Protein | 8e-38 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | EU250284.1.orf4.gene | Protein | 5e-38 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | DQ212986.1.gene4.p01 | Protein | 1e-39 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AM180355.1.gene1830. | Protein | 2e-40 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AE015929.1.gene1106. | Protein | 7e-31 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP000034.1.gene2186. | Protein | 5e-31 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_002695.1.916589.p | Protein | 4e-31 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | BAC0039 | Protein | 5e-31 | 43 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | AF130997.1.orf0.gene | Protein | 2e-37 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP001918.1.gene3444. | Protein | 3e-29 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | BAC0596 | Protein | 1e-29 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | CP001138.1.gene2239. | Protein | 1e-29 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | HE999704.1.gene1528. | Protein | 9e-30 | 41 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_010410.6002907.p0 | Protein | 1e-23 | 41 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | NC_011586.7046392.p0 | Protein | 1e-23 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | VFG1389 | Protein | 2e-31 | 44 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | VFG1563 | Protein | 7e-33 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | VFG1702 | Protein | 6e-33 | 42 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | VFG1390 | Protein | 7e-35 | 41 |
| LSEI_2808 | YP_807964.1 | DNA-binding response regulator | VFG1386 | Protein | 6e-33 | 41 |
