Gene Information

Name : LSEI_2681 (LSEI_2681)
Accession : YP_807842.1
Strain : Lactobacillus casei ATCC 334
Genome accession: NC_008526
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2667791 - 2668492 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence : 
TTGAAATCAACATTGCTTCTAGTGGAAGACGAAGCTGCTTTGGCAGATTCATTAACAACAGAGTTCGAGTTAGAGAATAT
GTCAGTTATTTGGGCAAAAGACGGCGCGGAGGCATTGACGCTGTTTAAGAACAATGAAGGTAAAATCAATGTCATTATTT
TGGATTGGATGCTGCCTAAACTAGACGGGTTTAGTGTTTTGCGGAAAATCAGACAATCCAGCCAAGTGCCTATTATTATG
TTGACGGCTCGTGACTACATCGGCGACAAGGTGGCTGGACTGACTGGCGGGGCCGATGATTACATCACCAAGCCTTTTGA
AATGGAAGAACTGGTTGCTCGTGTCGAAGTCGCCTTGCGTCACAATCGGCAGGCTGTCTCACCAGCGACTATTTTTCAAG
TCGATGATCTGCTGGTGGATACGGATAACAAACGCGTTCAGCGCGGTGAAGTGATTATGCCATTGACACAGCGGGAATAT
GAGTTGCTTGTCGAACTTGTTGCCCATCAGGACGAAGCTTGTTCGAGGGATGACTTGCTTGCTGCCGTCTGGGGAACCGA
TTTTGACGGTCAACCTAATATATTGGATGTCTATATCAGAAACTTACGTCATAAAATTGATGATCATTCAGGTAGCAAGA
AACTCATTCATACTGTTCGCGGCGTCGGCTATATGCTCTCGGCTAATGTTGCATCCATTTAG

Protein sequence : 
MKSTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGFSVLRKIRQSSQVPIIM
LTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREY
ELLVELVAHQDEACSRDDLLAAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANVASI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSEI_2681 YP_807842.1 DNA-binding response regulator HE999704.1.gene1528. Protein 3e-32 47
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0083 Protein 1e-30 45
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0111 Protein 3e-30 44
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0638 Protein 5e-24 44
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0308 Protein 3e-28 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 8e-30 43
LSEI_2681 YP_807842.1 DNA-binding response regulator NC_012469.1.7685629. Protein 1e-30 42
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0197 Protein 2e-31 42
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0125 Protein 3e-31 42
LSEI_2681 YP_807842.1 DNA-binding response regulator AE015929.1.gene1106. Protein 1e-25 41
LSEI_2681 YP_807842.1 DNA-binding response regulator BAC0347 Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSEI_2681 YP_807842.1 DNA-binding response regulator VFG0596 Protein 3e-31 43
LSEI_2681 YP_807842.1 DNA-binding response regulator VFG1389 Protein 6e-34 43
LSEI_2681 YP_807842.1 DNA-binding response regulator VFG1390 Protein 4e-34 41