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Name : LSEI_1836 (LSEI_1836) Accession : YP_807037.1 Strain : Lactobacillus casei ATCC 334 Genome accession: NC_008526 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1831033 - 1832316 bp Length : 1284 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATTTAAAACTGATCCGGCAAAAACCGGAATGGGCCAAGGAAAAGTTAGCTGCACGTGCGATTAAAGGTGAAGA GATTGATGAATTATTAGCTTTGGATACGCGCCGGCGTCAGGTGACCGTTCAAACTGAAGAGCTTAAAGCCAAGCGCAATG ATGTTTCAGGCCAAATTGCGGTTATGAAACGTAACAAGGAAAATGCTGACGATCAAATCAAGGCCATGCGGGAAGTAGGC CAAAAGATTGCGGCTTTAGACAAAGAACTCGCCCAGCTGAATGAAAAAGTAACCTACATTCTCGTCCGATTGCCAAACTT TCCGGCTGATGACGTGCCAATGTCGTTAAATGAAGACGATTCCCGTGAAGAATACAAATGGGGAAACATGCCAACGTTTG ATTTTGAACCAAAGCATCACTGGGATATTGGTGAAAAATTAGGCATTCTGGATTTTGAACGCGCGGCGAAGGTTGCCGGT AGCAGATTTGTTTACTATAAGGGTGCTGGTGCACGTCTTGAACGCGCCGTCTATAACTTCTTCTTGGATGAGCACCAAAA AGAAGGGTATGAAGAAATCATTCCCCCATACCTCGTTAACAATGATTCTATGTTCGGTACTGGTCAATTTCCAAAGTTCA CTGATGCGACCTATACGATCACGAATGATGGTGAACCACTGACTCTGATTCCAACAGCAGAAGTGCCTTTGGTCAACTAT TATCGGAATGACATTATTGATGCTGAAAAACTTCCAGTTAATTTCACCGCACTTACACCGGCTTTTCGTTCTGAAGCTGG CAGTGCCGGTCGCGATACTCGCGGCTTGATCCGGATGCATCAATTTAATAAGGTCGAAATGGTCAAGTTCTGCAAGCCTG AAGACTCTTGGAAACAACTTCAAAACTTGATTCACGATGCCGAAGATCTTTTGCAAAAGCTCGGATTGCCTTATCATGTC ATCACGCTGGCAAGTAATGACGCTAGCTTCACCAGTGCGAAGACGAATGATCTGGAAGTATGGATGCCAGCGCAAGATCG CTATCGTGAGATCTCAAGCTGCAGCAATTGCACTGATTTCCAAGCGCGTCGTGCACAAATTCGCTATCGTGATGACGATG GCAAATTGCAGTTTGTCCACACGCTCAATGGCTCAGGGCTTGCTGTAGGGCGAACAGTAGCTTCTATTTTGGAAAATTAT CAGCAAGCTGATGGTTCTGTGAAAATTCCTGATGTGATTGTACCATACATGCAAGGACAAACCGCAATCACCAAGGAAGA TTAA Protein sequence : MLDLKLIRQKPEWAKEKLAARAIKGEEIDELLALDTRRRQVTVQTEELKAKRNDVSGQIAVMKRNKENADDQIKAMREVG QKIAALDKELAQLNEKVTYILVRLPNFPADDVPMSLNEDDSREEYKWGNMPTFDFEPKHHWDIGEKLGILDFERAAKVAG SRFVYYKGAGARLERAVYNFFLDEHQKEGYEEIIPPYLVNNDSMFGTGQFPKFTDATYTITNDGEPLTLIPTAEVPLVNY YRNDIIDAEKLPVNFTALTPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKFCKPEDSWKQLQNLIHDAEDLLQKLGLPYHV ITLASNDASFTSAKTNDLEVWMPAQDRYREISSCSNCTDFQARRAQIRYRDDDGKLQFVHTLNGSGLAVGRTVASILENY QQADGSVKIPDVIVPYMQGQTAITKED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-129 | 61 |
