|
Name : rplS (PEPE_0850) Accession : YP_804352.1 Strain : Pediococcus pentosaceus ATCC 25745 Genome accession: NC_008525 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 857117 - 857476 bp Length : 360 bp Strand : + Note : this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site DNA sequence : ATGAATCTATTAATTGATAAGATTACAAAGGACCAACTACGTAGTGATATCCCTGAATTCCGTGCAGGAGATACTGTTAG AGTACATGCTAAGGTTGTTGAAGGTGACCACGAACGTATCCAATTGTTCGAAGGTGTAGTTATCAAACGCCATGGTAGCG GTATTAGTGCTACATACACTGTTCGTAAGATCAGTAACGGTGTTGGTGTGGAACGTACATTCCCACTACATTCACCACGT GTTGCTAAAATCGAAGTTATCCGTCATGGTCGTGTACGTCGTGCTAAACTTTACTACCTACGTGCATTACATGGTAAGGC AGCTCGTATTAAGGAAGATCGTCGTAAGGCTTTCAAATAA Protein sequence : MNLLIDKITKDQLRSDIPEFRAGDTVRVHAKVVEGDHERIQLFEGVVIKRHGSGISATYTVRKISNGVGVERTFPLHSPR VAKIEVIRHGRVRRAKLYYLRALHGKAARIKEDRRKAFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 1e-40 | 79 |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 4e-25 | 55 |
