Gene Information

Name : PEPE_1354 (PEPE_1354)
Accession : YP_804835.1
Strain : Pediococcus pentosaceus ATCC 25745
Genome accession: NC_008525
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1340948 - 1341670 bp
Length : 723 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTATATTGATGATTGAAGATAATAAATCTGTTTCCGATATGATGGGAATGTTTTTTAAAAAAGAAAGATGGAATGT
TACATTTGTGTATGATGGATTAAAAGCCATTGAAACTTTTAAAACCGATCCTGAACAATGGGACATCGTTTTACTTGATT
TAAATTTACCTGGAAAAGATGGTATGGAGGTAGCAGCTGAACTTCGACGCACGTCGCAGTCCATCCCCTTAATTATGTTG
ACAGCACGTGATTCAGAAAGTGATCAAGTTTTAGGCTTAGAAATGGGAGCCGATGAATATATTACTAAACCATTTAGTCC
TATTACGTTAATCGCTCGTATTAAGGCCTTGTACCGACGAGTGTCAATGAGTAGGGAAACGATGACGCAAGGTGCTCAGA
ATGCGAAATTCGATGTTAGAACGGCTCATCTTAAGATTAGTACATCTACTCGAGAGGTGTATTTAGACGAAAAGCTTATT
TCAGATTTAACCCCTAAAGAATTCGATTTACTTAAAACATTGGCGCAGAAGCCCATGCAGGTCTTCTCACGAGAACAACT
TCTACAAATAGTGTGGGATTATGAATATTATGGTGATGAACGTACGGTAGATGCCCATATTAAAAAGCTTCGCCAAAAAT
TAGAAGCAGTTGGTCCACAAGTGGTCCAAACGGTATGGGGAGTTGGCTATAAGTTTGATGATAGTAAAATCGATGAGGAT
TAG

Protein sequence : 
MRILMIEDNKSVSDMMGMFFKKERWNVTFVYDGLKAIETFKTDPEQWDIVLLDLNLPGKDGMEVAAELRRTSQSIPLIML
TARDSESDQVLGLEMGADEYITKPFSPITLIARIKALYRRVSMSRETMTQGAQNAKFDVRTAHLKISTSTREVYLDEKLI
SDLTPKEFDLLKTLAQKPMQVFSREQLLQIVWDYEYYGDERTVDAHIKKLRQKLEAVGPQVVQTVWGVGYKFDDSKIDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-38 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PEPE_1354 YP_804835.1 DNA-binding response regulator NC_012469.1.7685629. Protein 3e-40 43
PEPE_1354 YP_804835.1 DNA-binding response regulator HE999704.1.gene2815. Protein 6e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PEPE_1354 YP_804835.1 DNA-binding response regulator VFG1563 Protein 1e-38 44
PEPE_1354 YP_804835.1 DNA-binding response regulator VFG1702 Protein 8e-39 44