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Name : PEPE_0111 (PEPE_0111) Accession : YP_803660.1 Strain : Pediococcus pentosaceus ATCC 25745 Genome accession: NC_008525 Putative virulence/resistance : Unknown Product : succinyl-diaminopimelate desuccinylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0624 EC number : 3.5.1.16 Position : 121990 - 123141 bp Length : 1152 bp Strand : - Note : dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is simi DNA sequence : ATGGATACTATGGTTTCAAATTCGCAAACATATCTAAAAATTTTAGCTGATTTAATTAAAATCAAATCTGTTAACGATCA CGAATTAGAAGTTGCAGAATATTTGCAGGATTTATTCCAAGAAAATGGCATTGAGGCAAAAATTCTCCCACTTGAGGGTC AGCGGGCTAATCTAGTTGCCGAAATTGGGGAAGGCGCTCCTGTCTTAGCTGTTTCCGGACACATGGATGTCGTTGATCCT GGAAATTTGGCTGCATGGGATAATGATCCATTTACCATGACTGAAAAAGATGGCAAACTCTTTGGTCGCGGAATTACAGA TATGAAGGCTGGTTTAGCAGCTTTAGTAATTGCCATGATTGAATTGAAAAAACAAGGCTTACCCAAAAAAGGTACAATTC GTTTGCTAGCAACTGCCGGAGAAGAGGTTGGTGAAGAAGGTTCCGCCGCCTTTTATCGCGATCATTATATGGAAGACGCA GCGGGCTTGCTAATTGCGGAGCCTTCTACCGTCTACGGTACTGCTTCTGAACAAAAAGGTTCTTTCGATATTAAATTTAC TTCTAAAGGTACTTCCGTTCATAGCTCTACTCCTGAAAAAGGTTACAACGCTCTAGTACCGTTGATGCAACTATTGAATG AAGCTAATACCTACTTCGAAACGATTCCAGCCGGAGAGATGGGACCAGTACGTTTCAACATTGACGTTTTGAATGGTGGT AGTCAGATTAATTCCTTACCTGATTTAGCTACCGCTTTGGTCAACGTTCGTACGATTCCAGAATACGATAATAACCAAGT GGCTAAGCAGATTGAAACATTCGTTAAATCTTACAATGCAAATGGAGCTCAAATTAATACAGACTTAATTATGAATGAAT TTCCAATTGCTACGAGTCCTTCCAACCAGTTAGTTAAAATTATTCAGTCACTAGGTAAAGAATATGCAGGACGTGATATT GTCGTGGCTGCAAGCCCCGGAATTACCGATGCTTCTAATCTAGCTAAGGATAAGCCGCATGATTTTCCTTTTGCTGTATA TGGGCCAGGAGATGGTTCCCAACATCAAGTTAACGAAAGTTTACCTAAACAGATGTATTTAGACTTCATTGAAATCTATC AAAAATTATTTATTGAATTCCTCGAAAAATAA Protein sequence : MDTMVSNSQTYLKILADLIKIKSVNDHELEVAEYLQDLFQENGIEAKILPLEGQRANLVAEIGEGAPVLAVSGHMDVVDP GNLAAWDNDPFTMTEKDGKLFGRGITDMKAGLAALVIAMIELKKQGLPKKGTIRLLATAGEEVGEEGSAAFYRDHYMEDA AGLLIAEPSTVYGTASEQKGSFDIKFTSKGTSVHSSTPEKGYNALVPLMQLLNEANTYFETIPAGEMGPVRFNIDVLNGG SQINSLPDLATALVNVRTIPEYDNNQVAKQIETFVKSYNANGAQINTDLIMNEFPIATSPSNQLVKIIQSLGKEYAGRDI VVAASPGITDASNLAKDKPHDFPFAVYGPGDGSQHQVNESLPKQMYLDFIEIYQKLFIEFLEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAC20637.1 | - | Not tested | Internalin | Protein | 3e-55 | 41 |
| dapE | CAA07459.1 | succinyl-diaminopimelate desuccinylase | Not tested | Internalin | Protein | 9e-55 | 41 |
