Gene Information

Name : LVIS_0631 (LVIS_0631)
Accession : YP_794807.1
Strain : Lactobacillus brevis ATCC 367
Genome accession: NC_008497
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 660856 - 661563 bp
Length : 708 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTCGAGTTTTAGTCGTTGATGATGAACCCGCTATTGTGACGTTGTTACAATACAATTTGGAACAAGCAGATTATCA
GGTCGTTACCGCTATCGACGGCGAGCAGGCCCTAAATCTCGCCTTACATGAAAAATTTGATGTAATCTTATTGGACCTGA
TGCTGCCCAAAATGGATGGGGTGGAAGTGACCAAACGATTGCGGCAAGAAAAAGTCAAGACGCCGATCATTATGATTACC
GCTAAAACCAGCGAATTTGATACCGTCTTTGGTCTGGAGTTGGGGGCCGATGATTATATTACGAAGCCATTTAGTCCGCG
GGAAGTGATTGCCCGGATGAAAGCCGTGATGCGTCGCTACCATGAAGAAGAGCCTACCGATACGGTTCCAAGTCAACAAG
GACACCGATTACAGGTGGGGGATCTCACCATTGACCAAGATAAATTCCAGGTTAAACGGGGAAATCAAGCGATCGAACTA
ACCCCTAAGGAATTTGAATTGTTGTTGTTTTTTGCTAAGCGTCCCGGAAAAGTCTGGAGTCGTGAACAATTACTAGAAGG
CGTTTGGGGCTTTGATTACAGTGGGCAAACGCGGATGGTGGACATTCACGTCTCTCATTTACGTGAAAAAATTGAGCAAG
ACCCGAAGCATCCAACGTTACTAAAGACCGTTCGTGGATTTGGCTACACCTTTGAGGTTCAGCCATGA

Protein sequence : 
MSRVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDGVEVTKRLRQEKVKTPIIMIT
AKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHEEEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIEL
TPKEFELLLFFAKRPGKVWSREQLLEGVWGFDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFEVQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-41 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LVIS_0631 YP_794807.1 DNA-binding response regulator HE999704.1.gene2815. Protein 6e-66 58
LVIS_0631 YP_794807.1 DNA-binding response regulator AE016830.1.gene1681. Protein 9e-64 55
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 3e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 4e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 6e-60 54
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_012469.1.7686381. Protein 2e-57 50
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_012469.1.7685629. Protein 4e-49 48
LVIS_0631 YP_794807.1 DNA-binding response regulator AE000516.2.gene3505. Protein 5e-42 44
LVIS_0631 YP_794807.1 DNA-binding response regulator HE999704.1.gene1528. Protein 7e-39 43
LVIS_0631 YP_794807.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 7e-42 42
LVIS_0631 YP_794807.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 3e-39 42
LVIS_0631 YP_794807.1 DNA-binding response regulator CP001138.1.gene4273. Protein 2e-31 42
LVIS_0631 YP_794807.1 DNA-binding response regulator BAC0533 Protein 2e-31 42
LVIS_0631 YP_794807.1 DNA-binding response regulator NC_002695.1.915041.p Protein 6e-31 42
LVIS_0631 YP_794807.1 DNA-binding response regulator CP000647.1.gene4257. Protein 2e-31 42
LVIS_0631 YP_794807.1 DNA-binding response regulator CP004022.1.gene3215. Protein 1e-36 42
LVIS_0631 YP_794807.1 DNA-binding response regulator CP000034.1.gene3834. Protein 6e-31 42
LVIS_0631 YP_794807.1 DNA-binding response regulator BAC0125 Protein 2e-33 41
LVIS_0631 YP_794807.1 DNA-binding response regulator CP004022.1.gene1676. Protein 8e-34 41
LVIS_0631 YP_794807.1 DNA-binding response regulator CP001918.1.gene5135. Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LVIS_0631 YP_794807.1 DNA-binding response regulator VFG1563 Protein 1e-41 42
LVIS_0631 YP_794807.1 DNA-binding response regulator VFG1702 Protein 1e-41 42