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Name : LVIS_0045 (LVIS_0045) Accession : YP_794252.1 Strain : Lactobacillus brevis ATCC 367 Genome accession: NC_008497 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 49185 - 50981 bp Length : 1797 bp Strand : - Note : - DNA sequence : ATGCAAGACTATTATAACATGAATCAAACCACTTTGAGTATCACTTTAGACTATCTTCCTGAAGAAAACCATCCGGCAAG ATACATCAATCAATTCGTGGAAAGCTTAAAACTGACCGATACATACCAGTTTGGCCGGCCCCGGGAATACGATCTAGGGG CTCTACTAAAATTGGTTCTTTTGGCATACAGTTATGGTATTTTTAGCAGTCGTCAGATTGAAAGATTCGCGCGTGAAAAT AAACCAGCCGGATGGCTGGCCAGCAACCAAGTTCCTTCGTATCGAACCATTTGTCGTTTTAGAATTTCCGATGAACTTGC GAAATTGACCGAAGCAGGGTTAACGCAACTGACCACTTTTCTTCGTCAAAATAAGCTGATTGATGACGTCTCATTCATTG ATGGTACTAAGATTCTAGCCGATGCGAACAAGTATAGCTTCGTTTGGAAAAAGAATACGATTCGGTTCGATGAAATGAAC CGTGAAAAGCTGGTTGAACTGTTAGGCGAGCTACATGAGGCAAAAATCATCGGTGAAGTTCCGGCTGGGTCGAACTTAAC ACCAGAGCTTTTGGAGATGATGATCAGTAAGGTTGAGGACCATTTAGTGGTTTTAGAGCAGAAAGTGGCGGAGACCGAAA AGGTCTCGCCAAATCCAGCAAAACAAAAACGTCGCACGTTCCGAGCAAAGAAACGGAAACTAGTTGAACGACGGGATAAG ATGCGGGGGCATCAAGACCAACAGTCAATCTATGGGCAACGAAACAGCTATTCCAAGACCGATCATGACGCCACCTTTAT GCGGGTCAAGGAAGATCCGATGCAAAATGGTCAATTGAAACCAGCGTACAATCTTCAGATTGCCACAAGCGGTCAGTTCA TCACGGGTTACCAACTCTTTCAAAACCCAACAGATACCCGCACACTACAGCCATTCATCAAGCATTTACAGCAACACGGA ACGTTAGGCGCCACCATCGTGGCAGATGCTGGGTACGGCTCGGAAAGTAACTACCGTTTTCTAGAAGACAGCTTGCCTGA ACATACGGCCCTAATACCTTATGGGACAATGATCAAAGAGAATAGTCGGAAGTGGAAAAGCGATGACCGCAAGGTCATGA ACTGGGACTACTATGAAGCCGATGATTACTATGTTGATAGTAAAGGTGTACGGTTTAATTTTAAGGTGTATCGGAAAAGG ACTGATAAGTATGGATTTATACGTGATTTTAAAGAGTACGTCGCCGAAAAACTAGATGAGAATCAGAATGTGATTTCCGA AGCCCTCACGCCAAAAGGAAACCTACGAAGAATCCAAGTTAACAGCGCTTGGGAATACTTTAAAGCCAAGCAACGCGACC TTCTATCAACATCCCAAACAGCGGCCATCTACGCCCAACGAAAAATAGACGTGGAGCCAATTTTTGGAAAAATGAAGGCC TCTTTAAGATTCCATCGATTCTCGGTTCGCGGCCTAGACAGGGTCCGTAAGGAAGCCGGGATCGTGATTATGGCCTTGAA TATCCAGAAACTGGTTACACTGGTAGCCAACTCCAAGAGCAAAAGAATAGGACGAGAAAACAAAGATCGGTTTCTCGTCC TATTCCATTATAAAGAGACTAGTTATGTCACAGCCTCATTACTGAAAACCCACTTAATAATTAGTAATGAGCACTTCCCC AACTTTTCCGCGTTTCGATCCAACCGAATTAATTGCTCTCCGTGCTTTCACATGATGAATTACTGCATCATCGATATTTT TGTAAAGTTCCTCAATCAATGGAACATCGGCATTTGA Protein sequence : MQDYYNMNQTTLSITLDYLPEENHPARYINQFVESLKLTDTYQFGRPREYDLGALLKLVLLAYSYGIFSSRQIERFAREN KPAGWLASNQVPSYRTICRFRISDELAKLTEAGLTQLTTFLRQNKLIDDVSFIDGTKILADANKYSFVWKKNTIRFDEMN REKLVELLGELHEAKIIGEVPAGSNLTPELLEMMISKVEDHLVVLEQKVAETEKVSPNPAKQKRRTFRAKKRKLVERRDK MRGHQDQQSIYGQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNLQIATSGQFITGYQLFQNPTDTRTLQPFIKHLQQHG TLGATIVADAGYGSESNYRFLEDSLPEHTALIPYGTMIKENSRKWKSDDRKVMNWDYYEADDYYVDSKGVRFNFKVYRKR TDKYGFIRDFKEYVAEKLDENQNVISEALTPKGNLRRIQVNSAWEYFKAKQRDLLSTSQTAAIYAQRKIDVEPIFGKMKA SLRFHRFSVRGLDRVRKEAGIVIMALNIQKLVTLVANSKSKRIGRENKDRFLVLFHYKETSYVTASLLKTHLIISNEHFP NFSAFRSNRINCSPCFHMMNYCIIDIFVKFLNQWNIGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 1e-75 | 43 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 1e-75 | 43 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 1e-75 | 43 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 1e-75 | 43 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 8e-76 | 43 |
| SE0076 | NP_763631.1 | transposase | Not tested | SCCpbp4 | Protein | 2e-72 | 42 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 1e-58 | 41 |
