Gene Information

Name : LVIS_0045 (LVIS_0045)
Accession : YP_794252.1
Strain : Lactobacillus brevis ATCC 367
Genome accession: NC_008497
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 49185 - 50981 bp
Length : 1797 bp
Strand : -
Note : -

DNA sequence :
ATGCAAGACTATTATAACATGAATCAAACCACTTTGAGTATCACTTTAGACTATCTTCCTGAAGAAAACCATCCGGCAAG
ATACATCAATCAATTCGTGGAAAGCTTAAAACTGACCGATACATACCAGTTTGGCCGGCCCCGGGAATACGATCTAGGGG
CTCTACTAAAATTGGTTCTTTTGGCATACAGTTATGGTATTTTTAGCAGTCGTCAGATTGAAAGATTCGCGCGTGAAAAT
AAACCAGCCGGATGGCTGGCCAGCAACCAAGTTCCTTCGTATCGAACCATTTGTCGTTTTAGAATTTCCGATGAACTTGC
GAAATTGACCGAAGCAGGGTTAACGCAACTGACCACTTTTCTTCGTCAAAATAAGCTGATTGATGACGTCTCATTCATTG
ATGGTACTAAGATTCTAGCCGATGCGAACAAGTATAGCTTCGTTTGGAAAAAGAATACGATTCGGTTCGATGAAATGAAC
CGTGAAAAGCTGGTTGAACTGTTAGGCGAGCTACATGAGGCAAAAATCATCGGTGAAGTTCCGGCTGGGTCGAACTTAAC
ACCAGAGCTTTTGGAGATGATGATCAGTAAGGTTGAGGACCATTTAGTGGTTTTAGAGCAGAAAGTGGCGGAGACCGAAA
AGGTCTCGCCAAATCCAGCAAAACAAAAACGTCGCACGTTCCGAGCAAAGAAACGGAAACTAGTTGAACGACGGGATAAG
ATGCGGGGGCATCAAGACCAACAGTCAATCTATGGGCAACGAAACAGCTATTCCAAGACCGATCATGACGCCACCTTTAT
GCGGGTCAAGGAAGATCCGATGCAAAATGGTCAATTGAAACCAGCGTACAATCTTCAGATTGCCACAAGCGGTCAGTTCA
TCACGGGTTACCAACTCTTTCAAAACCCAACAGATACCCGCACACTACAGCCATTCATCAAGCATTTACAGCAACACGGA
ACGTTAGGCGCCACCATCGTGGCAGATGCTGGGTACGGCTCGGAAAGTAACTACCGTTTTCTAGAAGACAGCTTGCCTGA
ACATACGGCCCTAATACCTTATGGGACAATGATCAAAGAGAATAGTCGGAAGTGGAAAAGCGATGACCGCAAGGTCATGA
ACTGGGACTACTATGAAGCCGATGATTACTATGTTGATAGTAAAGGTGTACGGTTTAATTTTAAGGTGTATCGGAAAAGG
ACTGATAAGTATGGATTTATACGTGATTTTAAAGAGTACGTCGCCGAAAAACTAGATGAGAATCAGAATGTGATTTCCGA
AGCCCTCACGCCAAAAGGAAACCTACGAAGAATCCAAGTTAACAGCGCTTGGGAATACTTTAAAGCCAAGCAACGCGACC
TTCTATCAACATCCCAAACAGCGGCCATCTACGCCCAACGAAAAATAGACGTGGAGCCAATTTTTGGAAAAATGAAGGCC
TCTTTAAGATTCCATCGATTCTCGGTTCGCGGCCTAGACAGGGTCCGTAAGGAAGCCGGGATCGTGATTATGGCCTTGAA
TATCCAGAAACTGGTTACACTGGTAGCCAACTCCAAGAGCAAAAGAATAGGACGAGAAAACAAAGATCGGTTTCTCGTCC
TATTCCATTATAAAGAGACTAGTTATGTCACAGCCTCATTACTGAAAACCCACTTAATAATTAGTAATGAGCACTTCCCC
AACTTTTCCGCGTTTCGATCCAACCGAATTAATTGCTCTCCGTGCTTTCACATGATGAATTACTGCATCATCGATATTTT
TGTAAAGTTCCTCAATCAATGGAACATCGGCATTTGA

Protein sequence :
MQDYYNMNQTTLSITLDYLPEENHPARYINQFVESLKLTDTYQFGRPREYDLGALLKLVLLAYSYGIFSSRQIERFAREN
KPAGWLASNQVPSYRTICRFRISDELAKLTEAGLTQLTTFLRQNKLIDDVSFIDGTKILADANKYSFVWKKNTIRFDEMN
REKLVELLGELHEAKIIGEVPAGSNLTPELLEMMISKVEDHLVVLEQKVAETEKVSPNPAKQKRRTFRAKKRKLVERRDK
MRGHQDQQSIYGQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNLQIATSGQFITGYQLFQNPTDTRTLQPFIKHLQQHG
TLGATIVADAGYGSESNYRFLEDSLPEHTALIPYGTMIKENSRKWKSDDRKVMNWDYYEADDYYVDSKGVRFNFKVYRKR
TDKYGFIRDFKEYVAEKLDENQNVISEALTPKGNLRRIQVNSAWEYFKAKQRDLLSTSQTAAIYAQRKIDVEPIFGKMKA
SLRFHRFSVRGLDRVRKEAGIVIMALNIQKLVTLVANSKSKRIGRENKDRFLVLFHYKETSYVTASLLKTHLIISNEHFP
NFSAFRSNRINCSPCFHMMNYCIIDIFVKFLNQWNIGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 1e-75 43
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 1e-75 43
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 8e-76 43
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 1e-75 43
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 1e-75 43
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 2e-72 42
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 1e-58 41