Gene Information

Name : LVIS_2037 (LVIS_2037)
Accession : YP_796125.1
Strain : Lactobacillus brevis ATCC 367
Genome accession: NC_008497
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 1994228 - 1995883 bp
Length : 1656 bp
Strand : +
Note : -

DNA sequence :
ATGCAAGACTATTATAACATGAATCAAACCACTTTGAGTATCACTTTAGACTATCTTCCTGAAGAAAACCATCCGGCAAG
ATACATCAATCAATTCGTGGAAAGCTTAAAACTGACCGATACATACCAGTTTGGCCGGCCCCGGGAATACGATCTAGGGG
CTCTACTAAAATTGGTTCTTTTGGCATACAGTTATGGTATTTTTAGCAGTCGTCAGATTGAAAGATTCGCGCGTGAAAAT
AAACCAGCCGGATGGCTGGTCAGCAACCAAGTTCCTTCGTATCGAACCATTTGTCGTTTTAGAATTTCCGATGAACTTGC
GAAATTGACCGAAGCAGGGTTAACGCAACTGACCACTTTTCTTCGTCAAAATAAGCTGATTGATGACGTCTCATTCATTG
ATGGTACTAAGATTCTAGCCGATGCGAACAAGTATAGCTTCGTTTGGAAAAAGAATACGATTCGGTTCGATGAAATGAAC
CGTGAAAAGCTGGTTGAACTGTTAGGCGAGCTACATGAGGCAAAAATCATCGGTGAAGTTCCGGCTGGGTCGAACTTAAC
ACCAGAGCTTTTGGAGATGATGATCAGTAAGGTTGAGGACCATTTAGTGGTTTTAGAGCAGAAAGTGGCGGAGACCGAAA
AGGTCTCGCCAAATCCAGCAAAACAAAAACGTCGCACGTTCCGAGCAAAGAAACGGAAACTAGTTGAACGACGGGATAAG
ATGCGGGGGCATCAAGACCAACAGTCAATCTATGGGCAACGAAACAGCTATTCCAAGACCGATCATGACGCCACCTTTAT
GCGGGTCAAGGAAGATCCGATGCAAAATGGTCAATTGAAACCAGCGTACAATCTTCAGATTGCCACAAGCGGTCAGTTCA
TCACGGGTTACCAACTCTTTCAAAACCCAACAGATACCCGCACACTACAGCCATTCATCAAGCATTTACAGCAACACGGA
ACGTTAGGCGCCACCATCGTGGCAGATGCTGGGTACGGCTCGGAAAGTAACTACCGTTTTCTAGAAGACAGCTTGCCTGA
ACATACGGCCCTAATACCTTATGGGACAATGATCAAAGAGAATAGTCGGAAGTGGAAAAGCGATGACCGCAAGGTCATGA
ACTGGGACTACTATGAAGCCGATGATTACTATGTTGATAGTAAAGGTGTACGGTTTAATTTTAAGGCGTATCGGAAAAGG
ACTGATAAGTATGGATTTATACGTGATTTTAAAGAGTACGTCGCCGAAAAACTAGATGAGAATCAGAATGTGATTTCCGA
AGCCCTCACGCCAAAAGGAAACCTACGAAGAATCCAAGTTAACAGCGCTTGGGAATACTTTAAAGCCAAGCAACGCGACC
TTCTATCAACATCCCAAACAGCGGCCATCTACGCCCAACGAAAAATAGACGTGGAGCCAATTTTTGGAAAAATGAAGGCC
TCTTTAAGATTCCATCGATTCTCGGTTCGCGGCCTAGACAGGGTCCGTAAGGAAGCCGGGATCGTGATTATGGCCTTGAA
TATCCAGAAACTGGTTACACTGGTAGCCAACTCCAAGAGCAAAAGAATAGGACGAGAAAACAAAGATCGGTTTCTCGTCC
TATTCCATTATAAAGAGACTAGTTATGTCACAGCCTCTTTTTACATACCACTTTAA

Protein sequence :
MQDYYNMNQTTLSITLDYLPEENHPARYINQFVESLKLTDTYQFGRPREYDLGALLKLVLLAYSYGIFSSRQIERFAREN
KPAGWLVSNQVPSYRTICRFRISDELAKLTEAGLTQLTTFLRQNKLIDDVSFIDGTKILADANKYSFVWKKNTIRFDEMN
REKLVELLGELHEAKIIGEVPAGSNLTPELLEMMISKVEDHLVVLEQKVAETEKVSPNPAKQKRRTFRAKKRKLVERRDK
MRGHQDQQSIYGQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNLQIATSGQFITGYQLFQNPTDTRTLQPFIKHLQQHG
TLGATIVADAGYGSESNYRFLEDSLPEHTALIPYGTMIKENSRKWKSDDRKVMNWDYYEADDYYVDSKGVRFNFKAYRKR
TDKYGFIRDFKEYVAEKLDENQNVISEALTPKGNLRRIQVNSAWEYFKAKQRDLLSTSQTAAIYAQRKIDVEPIFGKMKA
SLRFHRFSVRGLDRVRKEAGIVIMALNIQKLVTLVANSKSKRIGRENKDRFLVLFHYKETSYVTASFYIPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 5e-76 43
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 6e-76 43
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 6e-76 43
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 6e-76 43
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 5e-76 43
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 1e-72 42
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 1e-58 41