Name : lysS (PA14_16530) Accession : YP_789464.1 Strain : Pseudomonas aeruginosa UCBPP-PA14 Genome accession: NC_008463 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1415600 - 1417105 bp Length : 1506 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGACCAACAACTCGACCAGCACGAACTGCAACAGGAAGAAAACAAGCTGATCGCCCAGCGCAAGGAAAAACTTGC CGCCGTGCGCGAAGCCCGGGCCATCGCCTTCCCCAACGACTTCCGCCGCGACGCCTACTTCGCGGACCTGCAGAAACAGT ACGCCGACAAGACCAAGGAAGAGCTGGAAGCCGCAGCGATCCCGGTCAAGGTGGCCGGTCGGATCATGCTCAACCGCGGT TCCTTCATCGTCCTCCAGGACAGCAGCGAGCGCCTGCAGGTCTACGTCAACCGCAAGACCCTGCCGGAAGAAACCCTGGC CGAGATCAAGACCTGGGACCTGGGCGACATCATCGGCGCCGAAGGCGTGCTGGCCCGCTCGGGCAAGGGCGACCTGTACG TCGACATGACCAGCGTGCGCCTGCTGACCAAGTCGCTGCGTCCGCTGCCGGACAAGCACCATGGCCTGACCGACACCGAG CAGCGCTACCGCCAGCGCTACGTCGACCTGATGGTCAACGAGGAAACCCGCCACACCTTCCGCGTGCGCTCCCAGGTCAT CGCCCACATCCGCCGTTTCCTCAGCGAGCGCGGTTTCCTCGAAGTGGAGACCCCGATGCTGCAGACCATCCCCGGCGGTG CCGCGGCCAAGCCGTTCGAGACCCATCACAACGCGCTGGACATGGCCATGTTCCTGCGCATCGCCCCGGAGCTGTACCTC AAGCGCCTGGTGGTCGGCGGTTTCGAGAAGGTCTTCGAGATCAACCGCAACTTCCGTAACGAAGGCGTCTCGACCCGGCA CAACCCCGAGTTCACCATGCTCGAGTTCTACCAGGCCTACGCCGACTACGAAGACAACATGGACCTGACCGAGGAACTGT TCCGCGAACTGGCCCAGGCGGTACTCGGTACCACCGACGTGCCCTACGGCGACAAGGTCTTCCACTTCGGCGAGCCGTTC GTGCGCCTGTCGGTGTTCGATTCGATCCTCAAGTACAACCCGGAGATCAGCGCCGCCGACCTCAACGACGTCGAGAAGGC GCGGGCCATCGCCAAGAAGGCCGGCGCCAAGGTCCTCGGCCACGAAGGCCTGGGCAAGCTGCAGGTGATGATTTTCGAGG AACTGGTGGAGCACAAGCTGGAGCAGCCGCACTTCATCACCCGCTACCCCTTCGAGGTTTCGCCGCTGGCCCGCCGCAAC GACGAAGACCCGAGCGTCACCGACCGCTTCGAGCTGTTCATCGGCGGCCGCGAGATCGCCAATGCCTATTCCGAGCTGAA CGACGCCGAGGACCAGGCCGAGCGCTTCATGTTGCAGGTCAAGGAGAAGGACGCCGGCGACGACGAGGCGATGCACTACG ACGCCGACTTCATCAATGCCCTGGAATACGGCATGCCGCCGACCGCCGGCGAAGGCATCGGCATCGACCGCCTGGTGATG CTGCTGACCAACTCGCCGTCGATCCGCGACGTGATCCTGTTCCCGCACATGCGCCCGCAGGCCTGA Protein sequence : MSDQQLDQHELQQEENKLIAQRKEKLAAVREARAIAFPNDFRRDAYFADLQKQYADKTKEELEAAAIPVKVAGRIMLNRG SFIVLQDSSERLQVYVNRKTLPEETLAEIKTWDLGDIIGAEGVLARSGKGDLYVDMTSVRLLTKSLRPLPDKHHGLTDTE QRYRQRYVDLMVNEETRHTFRVRSQVIAHIRRFLSERGFLEVETPMLQTIPGGAAAKPFETHHNALDMAMFLRIAPELYL KRLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQAVLGTTDVPYGDKVFHFGEPF VRLSVFDSILKYNPEISAADLNDVEKARAIAKKAGAKVLGHEGLGKLQVMIFEELVEHKLEQPHFITRYPFEVSPLARRN DEDPSVTDRFELFIGGREIANAYSELNDAEDQAERFMLQVKEKDAGDDEAMHYDADFINALEYGMPPTAGEGIGIDRLVM LLTNSPSIRDVILFPHMRPQA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-136 | 59 |
lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-78 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysS | YP_789464.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-136 | 59 |