|
Name : xerD (PA14_16040) Accession : YP_789425.1 Strain : Pseudomonas aeruginosa UCBPP-PA14 Genome accession: NC_008463 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1366492 - 1367388 bp Length : 897 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGAGTACCCTCGAACATCCCCTGATCGACCGTTTCCTCGATGCCCTGTGGCTGGAAAAAGGCCTTGCCGACAACACCCG CGAGGCTTATCGCAACGACCTCCAGCAGTTCAACGCCTGGCTCGATGGCCGCGGGCTGCGCCTGGAGGGCATCGGCCGCG ACGCCATCCTCGATCACCTGGCCTGGCGCCTGGAACAGGGCTACAAGGCTCGCTCGACCGCGCGCTTCCTCTCCGGCCTG CGTGGCTTCTACCGCTATTGCCTGCGCGATGGCCTGATCGCCGAGGATCCCACCTTGCAGGTGGACCTGCCGCAACTGGG CAAGCCGTTGCCGAAATCCCTCTCCGAAGCGGACGTCGAGGCATTGCTGGCGGCGCCGGAAGTCGACGACCCGCTGGGCC TGCGCGATCGCACCATGCTCGAAGTGCTGTATGCCTGCGGCCTGCGGGTCAGCGAACTGGTCGGCCTGACCCTGGAGCAG GTCAACCTGCGCCAGGGCGTGGTCAAGGTCTTCGGCAAGGGCAGCAAGGAGCGCCTGGTGCCGCTCGGCGAGGAAGCCAT CGGCTGGCTCGAACGCTACCTGCGCGAGGCGCGCGGCGACCTGCTCGGCGGGCGGCCCAGCGACGTGCTGTTCCCCAGCC TGCGCGGCGAACAGATGACCCGCCAGACCTTCTGGCATCGCATCAAGCATCACGCGCAGGTGGCGGCGATCGGTACGTCG ATTTCGCCGCACACCCTGCGCCACGCCTTCGCCACCCACCTGCTCAACCATGGCGCCGACCTGCGGGTGGTGCAGATGCT GCTCGGCCACAGCGACCTGTCGACCACCCAGATCTATACCCATATCGCCCGGGCCCGCCTCCAGGATCTGCACGCACGCC ACCACCCGCGAGGCTGA Protein sequence : MSTLEHPLIDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQGYKARSTARFLSGL RGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQ VNLRQGVVKVFGKGSKERLVPLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTS ISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 5e-65 | 54 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 5e-65 | 54 |
