Gene Information

Name : RPE_3542 (RPE_3542)
Accession : YP_782452.1
Strain : Rhodopseudomonas palustris BisA53
Genome accession: NC_008435
Putative virulence/resistance : Resistance
Product : Beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 3962410 - 3963228 bp
Length : 819 bp
Strand : -
Note : PFAM: penicillin-binding protein, transpeptidase; KEGG: rpc:RPC_3398 beta-lactamase

DNA sequence : 
GTGATCGATCGCCGCAAAATTCTGCAACTACTCGCCATCGCAGGGCTTGCGCCGACGTCGGCCCTGGCCGAAGTGGCGCC
GCCGCGCAGCGAGATTCGTGCATCACTCGCCAAGCGTTTTGCCGACGCCGGCACCCAAGGCACTTTTGTCGGCTACAAGA
CCGACGACTATCTGATCATCGCCAGCGACACCGAGCGTTCGGGGCAGGGGTTCTTGCCGGCCTCGACCTTCAAGATTCCG
AATTCGCTGATCGCGCTGGAAACCGGGGTGGTCGCGGATCCCGACAAGGACGTGTTCAAGTGGGACGGCGTCAGCCGCGA
CTTCCCCGGATGGAATCAGGATCACACGCTACGCTCGGCGATCGCGGTCTCCGCGGTGCCGGTCTATCAGGAGATCGCGC
GGCGGATCGGGCCGCAGCGCATGCAGCAATATCTCGATCTGTTCGACTACGGCAATCGCGCCATCGGCGGCGGCATCGAC
CAGTTCTGGCTCACCGGCGCGTTGCGGATCGACCCGATCCAGCAGATCGATTTCCTCGACCGGCTGCGCCGCGGCGCGCT
GCCGATCTCGGCGCGCAGCCAGCAGCTGGTGCGCGACATCCTGCCGGTGACGAAAGTCGGCGACGCGGTCATCCGCGCCA
AGACCGGGCTGTTGGGCGCCGAAACCGGCAAGCCGACGCTCGGCTGGCTGGTCGGCTGGGCCGAGAAGGGCGAGGCACGG
ACCGTGTTCGCGCTCAATTGCGACATCCGCGAGCCGAGCCACGTGGCGGCGCGGATGATTTTGGCGCAGCAATGCCTCGG
CGATATCGGCGCGCTCTGA

Protein sequence : 
MIDRRKILQLLAIAGLAPTSALAEVAPPRSEIRASLAKRFADAGTQGTFVGYKTDDYLIIASDTERSGQGFLPASTFKIP
NSLIALETGVVADPDKDVFKWDGVSRDFPGWNQDHTLRSAIAVSAVPVYQEIARRIGPQRMQQYLDLFDYGNRAIGGGID
QFWLTGALRIDPIQQIDFLDRLRRGALPISARSQQLVRDILPVTKVGDAVIRAKTGLLGAETGKPTLGWLVGWAEKGEAR
TVFALNCDIREPSHVAARMILAQQCLGDIGAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 1e-48 44
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 1e-48 44
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 2e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPE_3542 YP_782452.1 Beta-lactamase AM932669.1.gene2.p01 Protein 7e-49 44
RPE_3542 YP_782452.1 Beta-lactamase X58272.1.gene1.p01 Protein 4e-48 43
RPE_3542 YP_782452.1 Beta-lactamase HM015773.1.gene6.p01 Protein 1e-45 42
RPE_3542 YP_782452.1 Beta-lactamase JN205800.1.gene6.p01 Protein 7e-46 42
RPE_3542 YP_782452.1 Beta-lactamase NC_010410.6002874.p0 Protein 1e-45 42
RPE_3542 YP_782452.1 Beta-lactamase U37105.2.gene2.p01 Protein 1e-45 42
RPE_3542 YP_782452.1 Beta-lactamase AY343493.1.gene1.p01 Protein 1e-41 42
RPE_3542 YP_782452.1 Beta-lactamase HQ700343.1.gene1.p01 Protein 7e-45 41
RPE_3542 YP_782452.1 Beta-lactamase AY500137.1.gene1.p01 Protein 4e-46 41
RPE_3542 YP_782452.1 Beta-lactamase U59183.1.gene3.p01 Protein 9e-46 41
RPE_3542 YP_782452.1 Beta-lactamase Z22590.1.gene1.p01 Protein 4e-45 41
RPE_3542 YP_782452.1 Beta-lactamase AJ854182.1.gene1.p01 Protein 3e-45 41
RPE_3542 YP_782452.1 Beta-lactamase AF231133.1.gene3.p01 Protein 3e-43 41