Gene Information

Name : fliP (RPE_1549)
Accession : YP_780479.1
Strain : Rhodopseudomonas palustris BisA53
Genome accession: NC_008435
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1743925 - 1744689 bp
Length : 765 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
GTGAGACCGCCGAACAGCCCGCGTAGAGTTTTTTCCCTTCTCCTCCTCATCCTGACCGCCGCCGGATCGCTGATCGATCC
GGCGAGCGCGCAGGACATCAGTATCAATCTCGGCGGCAACACCGGCGGCGTCACCGAGCGCGCGATCCAGCTGATCGCGC
TGCTCACGGTGCTGTCGATCGCGCCGTCGATCCTGATCATGATGACGTCGTTCACCCGCATCGTGGTGGTGCTGTCGCTG
CTGCGCACCGCGCTCGGCACCGCGACCGCGCCGCCGAACGCGGTGATCCTGGCGCTGGCGCTGTTCTTGACCGGCTTCGT
GATGGGGCCGGTGCTGCAGAAATCCTACGACGACGGCATCAAGCCCTTGGTCGCCAACCAGATCACCGTCGAGCAGGCGT
TCGAGCGCGCGGTCGATCCGCTGCGCGGCTTCATGCAGAAGAACGTCCGCGAGAAGGACCTAAAGCTGTTCCTGGACCTG
TCAGGCGAGCCGCCGCCGGCGACGCCCGACGCGATGTCGCTGCGCATCCTGGTGCCGGCCTTCATGATCTCCGAACTGAA
GCGCGCCTTCGAGATCGGCTTTCTGTTATTCCTGCCGTTCCTGGTCATCGACCTCGTGGTCGCCTCGGTGCTGATGTCGA
TGGGCATGATGATGCTGCCGCCGGTGGTGGTGTCGCTGCCGTTCAAGCTGATCTTCTTCGTGCTGGTAGACGGCTGGTCG
CTGGTGGCGGGGAGTCTGGTGCAGAGCTATGGGCCCAGCGGGTAG

Protein sequence :
MRPPNSPRRVFSLLLLILTAAGSLIDPASAQDISINLGGNTGGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSL
LRTALGTATAPPNAVILALALFLTGFVMGPVLQKSYDDGIKPLVANQITVEQAFERAVDPLRGFMQKNVREKDLKLFLDL
SGEPPPATPDAMSLRILVPAFMISELKRAFEIGFLLFLPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWS
LVAGSLVQSYGPSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-35 46
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-34 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-34 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-34 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-34 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-33 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-57 56
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-56 55
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG1259 Protein 5e-55 49
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-50 47
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG0394 Protein 7e-37 44
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-34 42
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-36 42
fliP YP_780479.1 flagellar biosynthesis protein FliP VFG0188 Protein 6e-37 42