Gene Information

Name : RPE_1016 (RPE_1016)
Accession : YP_779952.1
Strain : Rhodopseudomonas palustris BisA53
Genome accession: NC_008435
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1137967 - 1139553 bp
Length : 1587 bp
Strand : +
Note : PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative

DNA sequence :
GTGACGACGCAGCTCGAACCACTTCCCGATGATCTCGCCGCCGCGCATGCGATGATCCTTGCGCAGCGCGAGCAGCTGAC
ATTGGCAAAGAGCGAACTCACCGTCGGCCGGTTGGAGATCGAGCGGCTGAAGCTGATGCTGGCCAAGGCGCGGCGCGAGC
AGTTCGGCCAATCCTCTGAACGCGGCAAGCTGCTGATCGAGCAGCTTGAGCTTGCGATCGAGGACCTCGAAGAGACCCAG
GCCGAACAGGCGACCAAGGCTGAGATTGCCGCGCCAGAGGCCGCCAAGGAAAAGCGTGCACAGGCTCCACGCCCGCCCCG
ACGCCCGCTGCCGGACAATCTGCCGGTCGAACGGATCGTCGAGCCCGCGCCCTGTGCCTGCGGCAAGTGCGGCAGCGCGC
GGCTGCACAAGCTCGGCGAGGTGGTGTCGAAAACCCTGGAATGCGAGCCGCGGCACTGGAAGATCATCGAGCACGTCCGT
GAGAAATTCTCCTGCCGGGACTGCGAGGCGATCACCGAAGCGCCGGCGCCCTCGCACCCGATCCCGCGCGGCTTTGCCGG
GTCGAGCCTGCTGGCGATGGTGCTGGTCAACAAGTTCCTGTTGCACCAGCCGCTGAACCGTCAGAGCAAGACCTTTGCTC
GTGAAGGCATCGAGATCGATGTCTCGACGCTGGCGGACCGGGTCGGCGCCTGCGTGGTGGCGCTGGAGCCGCTGATTGAC
GCGATCCGGATCCACGTGATGAGCGCAGAGCGGATCCACGCCGACGACACGACGGTGCCCGTGCTGGCGAAAATGAAGAC
GGTCACCGGCCGGATTTGGACCTATGTCCGCGATGACCGACCGTTTGGCGGCAGCGATCCGCCGGCGGCCCTGTTCTATT
ACTCACGCAACCGGGCTGGCGAGCATCCGCAACGCCATCTGGCCGGCTATGTCGGCCTCATGCAGGCCGATGCCTTTGAT
GGATACAACCAGCTCTACAAAGCGGGCCGCAAGCCGGCGCCGATTCTGGAAGCGGCGTGCTGGAGCCACGGCCGCAGAAA
GTTCTTCGACCTGGCGAAAACCGGAGAGGCGCCGATCGCAGCCGAGGCTGTGCGACGGATCGACGAACTGTTCGCGATCG
AGCGTACCATTAACGGCAAAGCACCGAAGCAGCGGCTTGCCATGCGCCGGGAGAAATCCGCGCCGTTCGTCACCGACCTC
GAAATCTGGATGCGCCAGCAGCGCACTTTGCTCTCGTCCAACAATGACACCACCAAGGCCATCAACTACCTGCTCAACCG
CTGGGCAGCGTTCACCCGCTTCCTCGACGATGGCCGCGTTTGTCTCACCAACAATGCTGCCGAGCGAGCTTTGCGTGGCG
TGGCGGTCGGAAGACGAAATTGGACCTTCGCCGGCTCGGATGCCGGCGGTCACCGCGCTGCTGCCGTCTACGCGCTGATC
GAAACTTGCAAGATGAACGACGTCGATCCGCAAGCCTGGCTCGCCGATGTCCTGGCCCGACTGCCGGATCATCCCGCCAG
CAAGGTCGCCGACCTGCTGCCGTGGAATTGGAAGGCCAACCAACTGCAGAGCAGCGCTGCCGCCTGA

Protein sequence :
MTTQLEPLPDDLAAAHAMILAQREQLTLAKSELTVGRLEIERLKLMLAKARREQFGQSSERGKLLIEQLELAIEDLEETQ
AEQATKAEIAAPEAAKEKRAQAPRPPRRPLPDNLPVERIVEPAPCACGKCGSARLHKLGEVVSKTLECEPRHWKIIEHVR
EKFSCRDCEAITEAPAPSHPIPRGFAGSSLLAMVLVNKFLLHQPLNRQSKTFAREGIEIDVSTLADRVGACVVALEPLID
AIRIHVMSAERIHADDTTVPVLAKMKTVTGRIWTYVRDDRPFGGSDPPAALFYYSRNRAGEHPQRHLAGYVGLMQADAFD
GYNQLYKAGRKPAPILEAACWSHGRRKFFDLAKTGEAPIAAEAVRRIDELFAIERTINGKAPKQRLAMRREKSAPFVTDL
EIWMRQQRTLLSSNNDTTKAINYLLNRWAAFTRFLDDGRVCLTNNAAERALRGVAVGRRNWTFAGSDAGGHRAAAVYALI
ETCKMNDVDPQAWLADVLARLPDHPASKVADLLPWNWKANQLQSSAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 8e-86 47
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 4e-84 47
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 4e-84 47
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-83 46
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 6e-99 45
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 3e-82 45
unnamed AAL57570.1 unknown Not tested LEE Protein 1e-87 43
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 4e-87 43
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 1e-87 42
unnamed AAC31494.1 L0015 Not tested LEE Protein 9e-88 42
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 5e-88 42
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 4e-88 42
tnp AEA34686.1 transposase Not tested Not named Protein 2e-88 42
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 8e-87 42
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 8e-87 42
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 1e-87 42
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 1e-87 42
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 3e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPE_1016 YP_779952.1 transposase IS66 VFG0793 Protein 5e-88 42