Gene Information

Name : Bamb_5883 (Bamb_5883)
Accession : YP_777763.1
Strain :
Genome accession: NC_008392
Putative virulence/resistance : Virulence
Product : lytic transglycosylase, catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 362818 - 363285 bp
Length : 468 bp
Strand : +
Note : PFAM: Lytic transglycosylase, catalytic; KEGG: bpm:BURPS1710b_0219 HpaH precursor

DNA sequence : 
ATGATGCGACTATTCACGCCCAAGCCGGCGCTCGCGCTGGCGCTTGCCGTTCTGTCCGTGCGGCCCGCCGAAGTGCGCGC
GCAGACCGCCGACTGCTTTGCGGCGGCCGCCGCCTATCAACATGTGAGCCCCGTCGTGCTGCGCGCGATCGCGTGGCAAG
AATCGCATGGCAACGCGAACGCGCTCCATCGCAACCGGAACGGTTCGACCGATTACGGCATGATGCAGATCAACTCGATT
CACCTTCCGCTGCTGTCGCGCTATGGCGTCTCGGCCGACGACCTCATGAACCCATGCTTGAGCGTGTACGTGGCTGCGTG
GCACCTGCACAAGATGATGGTCAAGTACGGGAATAACTGGGCGGCGATCGGTGCCTACCATTCGGAGACACCTGCCGAGC
GCGACCGCTACGCGCGTTCGGTGCAAAGCATCGTCGAGCGCATGAAGCTCGCGGATGACGGGCAGTAG

Protein sequence : 
MMRLFTPKPALALALAVLSVRPAEVRAQTADCFAAAAAYQHVSPVVLRAIAWQESHGNANALHRNRNGSTDYGMMQINSI
HLPLLSRYGVSADDLMNPCLSVYVAAWHLHKMMVKYGNNWAAIGAYHSETPAERDRYARSVQSIVERMKLADDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 6e-34 70
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 6e-34 70
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 9e-34 67
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-34 67
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-34 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_5883 YP_777763.1 lytic transglycosylase, catalytic VFG0994 Protein 9e-12 41