Gene Information

Name : Bamb_5862 (Bamb_5862)
Accession : YP_777742.1
Strain :
Genome accession: NC_008392
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 339100 - 339363 bp
Length : 264 bp
Strand : +
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; KEGG: bte:BTH_II0755 type III secretion inner membrane protein SctS

DNA sequence : 
ATGGAAACCGATACGCTCGTTCGCATCACCTCGCAGGGCCTGCTGCTCTGCCTGTCCGTCTCGATGCCGGTGGTGGCCGT
CGCCGCGCTCTCCGGCCTCGCGATTTCGTTCGTGCAGGCCATTACGTCGATGCAGGACCAAAGCATCTCGTACGCGGTGA
AGCTCGTGGCCGTCGTGGCCACCGTGCTCATCACCGGCGCCTGGGGCGCCGCCGCGATCCTGCGCTTCGCCAATCAGATC
ATCACGCTCGCGGTGCCATCATGA

Protein sequence : 
METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVATVLITGAWGAAAILRFANQI
ITLAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 7e-15 59
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 6e-15 59
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 5e-15 59
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 4e-15 59
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 9e-15 57
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 6e-15 57
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 5e-12 55
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 5e-12 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_5862 YP_777742.1 HrpO family type III secretion protein VFG0395 Protein 1e-05 42
Bamb_5862 YP_777742.1 HrpO family type III secretion protein VFG0187 Protein 4e-05 41
Bamb_5862 YP_777742.1 HrpO family type III secretion protein VFG0043 Protein 3e-06 41