Gene Information

Name : Bamb_5861 (Bamb_5861)
Accession : YP_777741.1
Strain :
Genome accession: NC_008392
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 338433 - 339089 bp
Length : 657 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGTTCAGTTTAGCGATCTCACCGGGCTGCTGATCACCGTCGTCGCGATCAGCCTGATCCCGTTCGTCGCCATGGTCGC
GACCTCGTACGCGAAGATCGTGGTCGTGCTCGGGCTGTTGCGCAACGCGCTCGGCGTCCAGCAGGTGCCGCCGAACATGG
TGCTCAACGGCATCGCGGTCCTCGTCTCCGCTTACGTGATGGCGCCGATCGGCATGCAGGCCATGCAAACCATGCAGACG
ATGCACCGCACCCCCGGCAGCGATACGTCGCTCGTCGTGCTCGATGCCTTCGATGCGGCAAAGGAGCCGTTTCGCGCCTT
TCTGAAGAAGCACGCGCACGAGCGCGAAAAGCGGTTCTTCGTGCGCTCGGCAACCGTGGTCTGGCCGAAGGACATGGCGG
CGAAGATCCGTGAGGACGACCTCATCGTCCTCGCCCCGGCCTTCACGCTGACCGAGATGGCCGACGCGTTCAAGATCGGC
TTTCTGCTGTACATCGCATTCATCGTCGTCGATCTCGTCATCGCCAACGTGCTGATGGCGATGGGCCTGAATCAGGTCCA
GCCGACGAACGTCGCGATCCCGTTCAAGCTGCTCTTGTTTGTCGTCATGAGCGGCTGGTCCACATTGATTCACGGTCTTG
TCATGACCTATCGCTGA

Protein sequence : 
MVQFSDLTGLLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAPIGMQAMQTMQT
MHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWPKDMAAKIREDDLIVLAPAFTLTEMADAFKIG
FLLYIAFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLFVVMSGWSTLIHGLVMTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-66 68
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-66 67
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-68 66
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-68 66
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-69 65
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-69 65
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-69 65
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 8e-69 65
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-45 45
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-36 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-31 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-31 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_5861 YP_777741.1 type III secretion system protein VFG0188 Protein 1e-49 47
Bamb_5861 YP_777741.1 type III secretion system protein VFG0394 Protein 1e-48 46
Bamb_5861 YP_777741.1 type III secretion system protein VFG0044 Protein 8e-46 43