Gene Information

Name : Bamb_5858 (Bamb_5858)
Accession : YP_777738.1
Strain :
Genome accession: NC_008392
Putative virulence/resistance : Virulence
Product : HrcV family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 334401 - 336377 bp
Length : 1977 bp
Strand : +
Note : TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: bma:BMAA1630 type III secretion inner membrane protein SctV

DNA sequence : 
ATGCTGAAGACCATCAAGCTGCCCGGCATCGGCGAGGCCGGCATCGCCATCCTGCTGATCGCGATCGTCTCGCTGATGAT
CCTGCCGCTGCCGCCCGCCATCATCGATGGTTTGCTCGCCATCAACATCGCGATCAGCATCACGCTGCTCATGGTGACGA
TGTACGTCGGCCATATCGCGACGCTGTCGGCGTTCCCGTCGGTACTGCTTTTCACGACGCTTTACCGGCTCTCGCTGAAC
ATCGCATCGACGAAGTCGATCCTGCTGCATGCCGATGCCGGCGAAATCATCGAGAGCTTCGGGCAGCTCGTCGTGGGCGG
CAATCTCGTCGTCGGCCTTGTCGTGTTCGTCATCATTTCGGTCGTGCAGTTCATCGTCATCGCCAAGGGCTCGGAACGCG
TCGCCGAAGTGGGGGCGCGCTTCACGCTCGATGCGCTGCCCGGCAAGCAGATGAGCATCGACGCCGATCTGCGCGCGAAC
ATCCTGACACCGGAGGAGGCGCGCAGCAAACGCGCGCGGCTCGCTATCGAAAGCCAGCTGCACGGCGGCATGGACGGTGC
GATGAAGTTCGTGAAAGGCGATGCGATCGCCGGCCTCATGATCACGATGATCAACATCGTCGCGGGCATTGCCGTGGGCG
TCGCCTATCACGGCATGTCCGCCGGCGAGGCGGCCAACCGCTTCTCGGTCCTCTCGATCGGCGACGCCATGGTCTCGCAG
ATTCCGTCGCTGCTGATCTCGGTGGCCGCGGGCGTCATGATCACGCGCGTGGACGAAGGCGGCGAGCACGGCAACGCCTC
GCTCGGCGAGGACATCCGGCGCCAGTTTACGAGCAGCTCGCGCGCGCTCTACTTCGCGTCGCTGCTGCTGCTCGGTTTCG
CGGCCGTGCCCGGATTTCCGGCGGCGCTCTTCGCGTTGCTCGCCGGGCTGCTCGGCTTCGTCGGCTACCGTCTGCAGAAA
AAGCAGCACGGCACGGCCAAAGGCGGCGGCAAGCCCGTCGTCGCGCTGCAGCGTGCCGGCGCCAGGGGCGACGCGCCCTC
GATCCTGCCGCGCCCGCCGCAGTTCACCTGCCCGCTCGGCGTGCGGCTCGCAGCCGATGTCAGCGCGCGTCTCGCGGCCG
ACGCGCTCGACCGCGCGTTCGATGTGCAGCGCCATGCGCTGCAGTCGGAAGTCGGCCTGCCGTTCCCGGGCATCATGATG
TGGACCGACGGCAAGCTGCCCGAGGACAGTTACGAAGTGCTCATCTTCGACGTGCCGCAAGGGCGCACCACGCTCGCCGA
AACGCGAGCGGTACACGCGGCGGCCGACGGCGCCGCCGCGGGCGCACCTGCCGCCGCGCCGACACCGGAAGCATTGATCG
CTCGCCACACGATCGACCTGCTGCGGCGCAATGCCCATCTCTTTCTCGGCATCCAGGAAGCGCAGTGGATGCTCGATCAG
CTCAACGAGGACTACCCGGGCCTCGTCGCCGAGGTGCAAAAGGCGCTGCCGCTGCAGAAGATGGCGGACGTGCTGCGCCG
GCTGCTGGAGGAGGACGTGCCCGTGCGCAACATCCGCAGCATTACCGAAAGCCTGATCGTCTGGGGGCCGAAGGAGAAGG
ACATGCTGATGTTGACCGAATACATCCGCATGGAGCTCGGCCGGCTCATCGCCTATCGCGCGACGGGCGGCCCACGGGAT
CTGCCCGTCCTGCTCGTGGACGTTCAGTTGGAGCAGCACATCCGGCAGTCGATCAAGCAGACGCCCACGGGCAACTTCCT
CGCGCTGCCGCCCGACGAGATCGCCGGGCTCGTCGGCAAGATCGCGGAGCTCGTCGGCGACACGCCACGCCAGCCGCTCG
CGCTCGTCGCGTCGATGGATATCCGGCGCTACATCAAGCGCATGATCGAGGCGCGGCTGCCCTGGCTGCCCGTCTACTCG
TATCAGGAGCTCGGCGCTCACGTCGATCTCCAGCCCGTCGGCCGCCTGGCGATGTGA

Protein sequence : 
MLKTIKLPGIGEAGIAILLIAIVSLMILPLPPAIIDGLLAINIAISITLLMVTMYVGHIATLSAFPSVLLFTTLYRLSLN
IASTKSILLHADAGEIIESFGQLVVGGNLVVGLVVFVIISVVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAN
ILTPEEARSKRARLAIESQLHGGMDGAMKFVKGDAIAGLMITMINIVAGIAVGVAYHGMSAGEAANRFSVLSIGDAMVSQ
IPSLLISVAAGVMITRVDEGGEHGNASLGEDIRRQFTSSSRALYFASLLLLGFAAVPGFPAALFALLAGLLGFVGYRLQK
KQHGTAKGGGKPVVALQRAGARGDAPSILPRPPQFTCPLGVRLAADVSARLAADALDRAFDVQRHALQSEVGLPFPGIMM
WTDGKLPEDSYEVLIFDVPQGRTTLAETRAVHAAADGAAAGAPAAAPTPEALIARHTIDLLRRNAHLFLGIQEAQWMLDQ
LNEDYPGLVAEVQKALPLQKMADVLRRLLEEDVPVRNIRSITESLIVWGPKEKDMLMLTEYIRMELGRLIAYRATGGPRD
LPVLLVDVQLEQHIRQSIKQTPTGNFLALPPDEIAGLVGKIAELVGDTPRQPLALVASMDIRRYIKRMIEARLPWLPVYS
YQELGAHVDLQPVGRLAM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 3e-146 64
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 3e-146 64
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 2e-144 63
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 5e-145 63
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 8e-145 63
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 3e-143 62
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 2e-143 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_5858 YP_777738.1 HrcV family type III secretion protein VFG0064 Protein 3e-89 41