Gene Information

Name : Bamb_4356 (Bamb_4356)
Accession : YP_776242.1
Strain :
Genome accession: NC_008391
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1282837 - 1283499 bp
Length : 663 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bur:Bcep18194_B0768 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCGTACTGCTCGTCGAGGACGATCCGCTGATCGGCAGCGGTCTCGAACAGGGCCTCAAACAGGAAGGCTTCGCGGT
CGACTGGGTCAAGGACGGCGACGCCGCGTCGCTCGCGCTGCGCTCGACCGCGTATGGCCTCCTGCTGCTCGACCTCGGAC
TGCCGAACCGCGACGGCCTGTCGGTGCTCGCGTCGCTGCGCCGCCGCGACGAAACCCTGCCCGCGATCATCATCACCGCG
CGCGACGGCGTGCCGGACCGCATCGCCGGCCTCGACAGCGGCGCCGACGACTACCTCGTCAAGCCGTTCGTGCTCGAGGA
GCTGCTCGCCCGCATCCGCGCGGTCAACCGCCGCCATGCGGGGCGCGCGCAAACGACGCTCGCGATCGGCCCGCTGCGGC
TCGATCCGGTCAAGCACCTGGTCTGGCTCAACGACGACGAAGTCACGCTGTCGCCGAAGGAATTCGTGCTGCTGCACGAG
CTGATGCGCGACCCCGGCGCGGTAATCTCGCGCGAACAGTTCGAGGAACGGCTATACAGCTGGGGCGAGGAAATCGAGAG
CAACGCAGTGCAGGTGCACATCCACAACCTGCGCAAGAAACTCGGCCACGACATGATCCGCACCGTGCGCGGCGTCGGCT
ACCGGATCGGTGACGGCGCATGA

Protein sequence : 
MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTAYGLLLLDLGLPNRDGLSVLASLRRRDETLPAIIITA
RDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHAGRAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHE
LMRDPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDMIRTVRGVGYRIGDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-38 50
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-25 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_4356 YP_776242.1 two component transcriptional regulator BAC0487 Protein 2e-33 45
Bamb_4356 YP_776242.1 two component transcriptional regulator BAC0083 Protein 2e-29 42
Bamb_4356 YP_776242.1 two component transcriptional regulator BAC0197 Protein 8e-29 42
Bamb_4356 YP_776242.1 two component transcriptional regulator AE015929.1.gene1106. Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_4356 YP_776242.1 two component transcriptional regulator VFG0473 Protein 4e-42 50
Bamb_4356 YP_776242.1 two component transcriptional regulator VFG0596 Protein 1e-25 42