Gene Information

Name : Bamb_4229 (Bamb_4229)
Accession : YP_776116.1
Strain :
Genome accession: NC_008391
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1152045 - 1152323 bp
Length : 279 bp
Strand : -
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; KEGG: pae:PA1692 probable translocation protein in type III secretion

DNA sequence : 
ATGACGAGCTCGACGATCCTCGACCTGACGCGGCAGGCGCTGATGCTGGTGCTGCTGCTGTCGTTGCCGATCGTGCTGAT
CGCGACCGTGACCGGCCTCGTCGTCGCGATCCTGCAGGCGGTCACGCAGGTGCAGGACGCCAACATCGGCATCGCGGTGC
GGCTGATCGCCGTGATGGTCGCGCTCGTGCTGCTGTCGGGCTGGCTCGGCAGCGAGGTGTTGCGCTTCGCGCAGCAGGCG
CTTGAACGCATGTTCGTTTCTTCCTCAGGAGTGCTTTGA

Protein sequence : 
MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMVALVLLSGWLGSEVLRFAQQA
LERMFVSSSGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-06 49
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 2e-04 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 2e-04 44
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 2e-04 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 1e-06 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-04 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bamb_4229 YP_776116.1 HrpO family type III secretion protein VFG0187 Protein 1e-04 50
Bamb_4229 YP_776116.1 HrpO family type III secretion protein VFG0395 Protein 5e-07 43