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Name : Bamb_0765 (Bamb_0765) Accession : YP_772658.1 Strain : Genome accession: NC_008390 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 850042 - 851934 bp Length : 1893 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bur:Bcep18194_A3984 polysaccharide biosynthesis p DNA sequence : ATGTTCCGATCCAAAGCATCGTGGCTTTCACTGAGTGCTTTCCTGTTCGACCTGACAGCGGTTGTCGCGTCGTGGTTGTT TGCTTACCTCGTTCGTTTCAACGGCAGTATTCCGGCTGATTTTCTCGGCGGCGCACTGCAGGCACTCGTCTGGGCGTTGC CGGTCTACGCGCTGATGTTCCATCTGTTCGGCCTGTACCGCGGCCTGTGGGTGTTCGCGAGCCTGCCGGACCTGATGCGC ATTTCGAAGGCGGTCGGAGGCGGCGGTGTGATCGTGATGATCGGTGCGGTGATGTTCCAGCCGTCCCCGATCATTCCGCG CTCGGTGCTGATCGTGTCGCCGCTGATGTTGTTCCTCGCGATGGGCGGCGCTCGCGCGCTTTACCGCGCGACAAAGGAGT TCTACCTGTATGGCGGGCTGGTCGGGCAGGGCAAGCCGGTGCTGGTGCTCGGGGCCGGCACGGCAGGCGCGAGCCTCGCG CGTGAGCTGTCGCGTTCGGGTGAGTGGCGTCTGGTTGGCCTGCTCGACGACGATGTCACAAAGCAAGGACGCGAGATCTA TGGCTACAAGGTGCTCGGTTCGTTCAACGACCTGAAGCACTGGACCGACGCGATGAAGATCGAATACGCGATCATCGCGA TTCCGTCGGCGTCGGTCGAAACGCAGCGGCGCGTCGCGACGCTGTGCGTGCGGGCGGGCGTGAAGGCGATGGTACTGCCG TCGCTGACCGCGTTGATGCCGGGGCAGGGGTTCCTGTCGCAAGTGCGCAATATCGACCTCGAGGATCTGCTTGGCCGCGA CGCGGTGACGATCGACACGCCGCACGTCGAGGCGTTGCTGCGCGGTCGCGTCGTGATGGTGACGGGCGCTGGCGGTTCAA TCGGTTCGGAGCTGTGCCGGCAGATCCTTCGTTTCGCGCCGGCGCAGCTCGTTGCGTTCGACCTGTCCGAATACGCGATG TACCGGCTTGCCGAAGAGTTGCGCGAACGCTTTCCGGATCAGCCGGTGGTGCCGATCATTGGCGATGCCAAGGATTCGCT GCTGCTCGATCAGGTGATGTCGCGTCATGCGCCGCACATCGTGTTCCATGCGGCCGCGTACAAACACGTGCCGCTGATGG AGGAACACAACGCGTGGCAGGCGCTACGCAACAATGTACTCGGCACGTACCGCGTTGCATGCGCCGCGATCCGCCACGAC GTGCGCCATTTCGTGCTCATCTCTACCGACAAGGCCGTCAACCCGACCAACGTGATGGGCGCGAGCAAGCGTTTGGCTGA GATGGTCTGCCAGGCGCTGCAGCAGACGAGCGGCGGTACGCAGTTCGAGACCGTGCGCTTCGGCAACGTGCTCGGCAGCG CCGGTAGCGTGATTCCGAAGTTCCAGCAGCAGATCGCCAAGGGTGGCCCGGTGACGGTCACGCACCCGGAAATCACGCGG TTCTTCATGACGATTCCGGAAGCGTCGCAGCTCGTGCTGCAGGCGTCGAGCATGGGGCATGGGGGCGAAATCTTTATTCT CGAGATGGGGCAGCCGGTCAGGATCGTTGATCTCGCTCGCGATCTGATCCGCCTGTACGGCTTCTCGGAAGGGCAGATCC GGATCGACTTTACGGGGCTGAGGCCCGGCGAGAAGCTCTACGAGGAACTCCTCGCGGACGACGAGACGACCACGCGCACA CCGCATCCGAAGCTGCGGATCGCACGCGCGCGCGAAGTGCCGGACCACCTCCTTGACGAACTGCTGCCGTGGCTGATGCA GCGTCGTGTATTGAGCGACGACGAAGTGCGTCGGGATCTGCGGCGCTGGGTGCCCGAATACCAGACGGCTGCGAGTCCCG CCCTTCAAACCGTACCCACGTTGTTCCCCTCGAAGTCGGCGGCGCGAGATTAG Protein sequence : MFRSKASWLSLSAFLFDLTAVVASWLFAYLVRFNGSIPADFLGGALQALVWALPVYALMFHLFGLYRGLWVFASLPDLMR ISKAVGGGGVIVMIGAVMFQPSPIIPRSVLIVSPLMLFLAMGGARALYRATKEFYLYGGLVGQGKPVLVLGAGTAGASLA RELSRSGEWRLVGLLDDDVTKQGREIYGYKVLGSFNDLKHWTDAMKIEYAIIAIPSASVETQRRVATLCVRAGVKAMVLP SLTALMPGQGFLSQVRNIDLEDLLGRDAVTIDTPHVEALLRGRVVMVTGAGGSIGSELCRQILRFAPAQLVAFDLSEYAM YRLAEELRERFPDQPVVPIIGDAKDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVACAAIRHD VRHFVLISTDKAVNPTNVMGASKRLAEMVCQALQQTSGGTQFETVRFGNVLGSAGSVIPKFQQQIAKGGPVTVTHPEITR FFMTIPEASQLVLQASSMGHGGEIFILEMGQPVRIVDLARDLIRLYGFSEGQIRIDFTGLRPGEKLYEELLADDETTTRT PHPKLRIARAREVPDHLLDELLPWLMQRRVLSDDEVRRDLRRWVPEYQTAASPALQTVPTLFPSKSAARD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-90 | 43 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-89 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Bamb_0765 | YP_772658.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-90 | 47 |
| Bamb_0765 | YP_772658.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-83 | 44 |
