Gene Information

Name : Bamb_6614 (Bamb_6614)
Accession : YP_771691.1
Strain :
Genome accession: NC_008385
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : 5.99.1.2
Position : 19960 - 22023 bp
Length : 2064 bp
Strand : +
Note : KEGG: reu:Reut_D6523 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA

DNA sequence :
ATGCGCCTTTTCATCGCAGAAAAGCCGTCCGTCGCCAAGGCCATCGCCGGCGAGCTGGGCGCGACCGGCAAGGGCGACGG
CTTCATCGAGTGCGGCACCGACAAAGTGACCTGGTGCTTCGGGCACATGCTCGAACAGGCCGACCCCGACGAGTACACGC
CCGATGACGTGCCGCGCGGCCAGTCCGGCAAGAAGGTCTGGCGCGTCGATGAGCTGCCCATCATCCCCGAGAGCTGGATT
CTCAAGCCCAAGGACGACGCGAAGAAGCAGCTCGCCGTGATCGGCAAGCTGCTCAAGGAGGCCAAGGAGATCGTCAACGC
CGGCGACCCCGACCGCGAAGGCCAGTTGCTGGTTGACGAAGTGCTGGAGCACTTCCGCAACAGCAAGCCGGTGCGCCGCT
TTTGGGTGAGCGCGCAGGACTCCGTTTCCGTCAAGCGCGGCCTGGCCGCGTTGAAGGAGAACACCACCTATGCAGGCTGG
GCCGACGCTGCACGCGGGCGGCAGCGCGCCGACTGGCTGATCGGCATGAACCTCAGCCGCGCGTACACGCTGCGCGCGCA
GCGCGGCGGCTCGCGCGCCCTGCTGACCGTGGGCCGCGTGCAGACGCCGACGCTGGCCCTCGTGGTCGCCCGCGACCGCG
AGATCGAGGCATTCAAGGCCGTGCCGTACCACACCATCCGGGCGGTGGTGCAGCACGCCGGCGGCAGCTTCGCCGCCGCA
TGGAAGGCGAAGGAGGATCAAGCCGGCCTGGACAGCGAAGGCCGCCTTGTCGATACCGCCGTCGCCGACGCCCTGGTGGC
CGCCGTCAAGGGCCAGCCGGGCACCATCGCCGCGTACAAACAGGAGGCCAAGAAGCAGAACCAGCCGCTGGCCTTCGCCC
TGTCCGACATTACGGCACTGGCCTCGGCCAAGTTCGGCTACAGCGCCGAGGACGTGCTGAACACCTGCCAGGCGCTCTAC
GAGACGCACAAGCTGACCTCGTACCCGCGCACCGACTGCGCCTACCTGCCGGAGTCGCAGCACGCCGACGCGCCGCGCGT
GCTGGAGGCGATCAAGCACGTCAACCCCGAACTGGCCGGCCTGGTCGATGGTGCCGATCCGCGTATCAAGTCCAAGACGT
GGGACGACTCGAAGATCACCGCGCACCACGGCATCGTGCCGACCATGCAGAAGGGCAGCAAGGCCGCCCTCAGCGAGCGC
GAGCGCAACATCTACGACCTGATCGTGCGCGCCTACCTGGCGCAGTTCTACCCGCTGCACGAGTACATGCAGACCACCGT
GGGCGTCGAGATCGCGGGCGAGAACTTCGCCGCGAGCGGCAAGGTAGTCACGCGCAACGGCTGGCGTGACGTGTACAGCC
AGGCCGACGAGGAAGGCGAGAAGGACGAGGACGACGACAGCGGCACGCAGGCCCTGCCGTCGATGGCCCAGGGCGACGCC
GTGACCTGCACGGACGCCACCCGCAAGGACGCCAAGACGAAGCCGCCAGCGCGCTTTACCGAGGGCACGCTGATCCGCGC
GATGGAGAACATCCACAAGTTCGTCAGCGATGCCGAGCACAAGAAGATGCTGCGCGAGGGCGACGGCATCGGCACGTCGG
CCACCCGCGCGTCGATCATTTCCGAGTTGAAGCGGCGCGAGTTCCTGGCCGTCAAAGGCAAGCAGATCATCAGCACGACC
CTCGGCCGCAGCGTCATCGACGCGCTGCCCGAGGTTGTGAAAAGCCCGGTGCTGACCGCGCTCTACGAGCGGATGCTGAA
AGGCGTCGAGCAGGGCACGGCCGCCCTGGACGCCTTCATCACGAAGCAAGAGACGTTCATCCGCGACCAGGTGGCGAAGG
CCAACAGCGGAGCCGTGACCATCGCCGGCGGCAAGGAAGCCGCGCCGGTGTCATCCCTTCACAAGTGCATGGCCTGCGGC
AGCGGCTTGTCGCGCCGGCCGAGCAAGAAGAAGGGGCAATTCTGGTGGGGTTGCAGCAACTTCCCCACATGCAAGCAGAC
CTACCCCGACCTCAAGGGTCGGCCCGACTACAGCAAGGGCCGCAACGGCCCGGCATCCGAATGA

Protein sequence :
MRLFIAEKPSVAKAIAGELGATGKGDGFIECGTDKVTWCFGHMLEQADPDEYTPDDVPRGQSGKKVWRVDELPIIPESWI
LKPKDDAKKQLAVIGKLLKEAKEIVNAGDPDREGQLLVDEVLEHFRNSKPVRRFWVSAQDSVSVKRGLAALKENTTYAGW
ADAARGRQRADWLIGMNLSRAYTLRAQRGGSRALLTVGRVQTPTLALVVARDREIEAFKAVPYHTIRAVVQHAGGSFAAA
WKAKEDQAGLDSEGRLVDTAVADALVAAVKGQPGTIAAYKQEAKKQNQPLAFALSDITALASAKFGYSAEDVLNTCQALY
ETHKLTSYPRTDCAYLPESQHADAPRVLEAIKHVNPELAGLVDGADPRIKSKTWDDSKITAHHGIVPTMQKGSKAALSER
ERNIYDLIVRAYLAQFYPLHEYMQTTVGVEIAGENFAASGKVVTRNGWRDVYSQADEEGEKDEDDDSGTQALPSMAQGDA
VTCTDATRKDAKTKPPARFTEGTLIRAMENIHKFVSDAEHKKMLREGDGIGTSATRASIISELKRREFLAVKGKQIISTT
LGRSVIDALPEVVKSPVLTALYERMLKGVEQGTAALDAFITKQETFIRDQVAKANSGAVTIAGGKEAAPVSSLHKCMACG
SGLSRRPSKKKGQFWWGCSNFPTCKQTYPDLKGRPDYSKGRNGPASE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 5e-119 43
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 5e-119 43
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-119 43
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 7e-107 41