|
Name : pRL110246 (pRL110246) Accession : YP_771280.1 Strain : Genome accession: NC_008384 Putative virulence/resistance : Unknown Product : putative ATP-binding component of ABC transporter Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 262918 - 264585 bp Length : 1668 bp Strand : + Note : similarity:fasta; SWALL:Q989F4 (EMBL:AP003009); Rhizobium loti; ABC transporter, ATP-binding protein; length 555 aa; 555 aa overlap; query 1-555 aa; subject 1-555 aa DNA sequence : ATGGCTCTTGCACTGGTCAATTCCTTCGCCCCGCCCGTCCGCCACGATCATGATGGCCGTTCGGACACGCCGATCATCGA CGCCCGCAACGTGGCGGTGAATTTCAAGGTCGAAGACGGCATGGTCGAAGCCGTCAAGGACGTCTCGTTTCAGCTCTATC GCGGCGAGACGATCGCCATCGTCGGCGAATCCGGCTCCGGCAAATCGGTGACGGCGCGAACGGTGATGGGGCTGTTGTCG AAGCGCGCCGTCGTCTCCGAGAAATCGACGGTCGCCTATGACGGCAGCAACATCCTGAAATTTTCCGAGCGGGCGCGCCG CAAGCTGCGCGGCGACCGCATATCGATGATCTTCCAGGAGCCGATGAGCTCGCTGAACCCGATCTATACGATCGGCAGCC AGATCGTCGAAGCGATCCGCGTGCATCGCCGGATCAGCAAGAGAGATGCGCAAAAGCGCGCGCTCGAACTGCTCGAACAT GTGCAGATCCCCGATCCCGCCGCGCGGCTCATGCAATATCCGCATCAGCTTTCCGGCGGCCAGCGCCAGCGCGTGATGAT CGCCATGGCGCTTGCCAACGATCCGGATGTGCTGATCGCCGACGAGCCGACGACGGCACTCGACGTCACCGTGCAGGCGC AGATCCTGAACCTGATCCGCAACCTGCAGAAGGAACTGGGGATGGCTGTCATCCTCATCACCCACGATCTGACCGTGGTG CGGCAGTTCTCGGATTACGTCTATGTGATGCAGCTTGGCGAAGTGCGCGAGCACAACACCACCGAAGCGCTGTTTGCCAA TCCGCAGGACGCCTATACCAAGCATCTGCTCGCCTCCGAGCCGCGTGGCCAGGCCAATCCGCTACCCGAAGGGTCGGATG TCATCCTCGATGCCAAGGGCGTGCGCGTCTCCTTCATGATGCGTCACGGTACCTTTCTGAAGCCGGCGATGCGCGAGCTT GTCGCCGTCGACAGCCTCGACCTGACGCTGCGCCGTCACGAGACGCTGGGGCTGGTCGGCGAATCCGGCTCCGGCAAGAC GACGTTCGGCCAGGCGATCCTGCGGCTGAACACGCCGGACAGCGGCGAGATCCGTTTCGACAATCAGCCGATCCACGGCC TGTCCCGGGCCGAGATGCGGCCCTTGCGCGCCCGCATGCAGGTGGTGTTCCAGGATCCGTTCTCATCGCTCAATCCGCGC ATGACGATCGGCCAGATCATCGAGGAGGGCCTCGTCGTCAACAGGCTGGGCGCCACCAAGGCCGAACGGCAGGACCGGGT GCGCGAAGCGCTGATTGCCGCCGGCATGCCCGGCAATATCCTGTCGCGCTTCCCGCACGAATTCTCCGGCGGCCAGCGCC AGCGCATCGCAATCGCCCGCGCCATCGCGCTGGAGCCGGAATTCATCCTGCTCGACGAGCCGACATCGGCGCTCGACCTT TCGGTCCAGGCGCAGATCATCGAACTGCTGCGCAAGCTGCAGGACGAGCGGGGCCTGAGTTACCTGTTCATCTCCCACGA CCTCAAGGTCGTCAGGGCGCTCTGCCATCGCGTCATCGTCATGCAGCATGGCAAGATCGTCGAAGAGGGCCCTGTCAACG AAGTTTTATCCCATCCCAAGACCGCTTACACCGAACGGCTCGTCAAGGCCGCTTTCGAGGTAGCATGA Protein sequence : MALALVNSFAPPVRHDHDGRSDTPIIDARNVAVNFKVEDGMVEAVKDVSFQLYRGETIAIVGESGSGKSVTARTVMGLLS KRAVVSEKSTVAYDGSNILKFSERARRKLRGDRISMIFQEPMSSLNPIYTIGSQIVEAIRVHRRISKRDAQKRALELLEH VQIPDPAARLMQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRNLQKELGMAVILITHDLTVV RQFSDYVYVMQLGEVREHNTTEALFANPQDAYTKHLLASEPRGQANPLPEGSDVILDAKGVRVSFMMRHGTFLKPAMREL VAVDSLDLTLRRHETLGLVGESGSGKTTFGQAILRLNTPDSGEIRFDNQPIHGLSRAEMRPLRARMQVVFQDPFSSLNPR MTIGQIIEEGLVVNRLGATKAERQDRVREALIAAGMPGNILSRFPHEFSGGQRQRIAIARAIALEPEFILLDEPTSALDL SVQAQIIELLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQHGKIVEEGPVNEVLSHPKTAYTERLVKAAFEVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-78 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-78 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 4e-78 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-78 | 43 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 6e-98 | 42 |
