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Name : hsdR (pRL110101) Accession : YP_771133.1 Strain : Genome accession: NC_008384 Putative virulence/resistance : Unknown Product : putative type I restriction-modification system HsdR Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 117032 - 120226 bp Length : 3195 bp Strand : + Note : similarity:fasta; SWALL:P95512 (EMBL:U46781); Pasteurella haemolytica; HsdR; hsdR; length 1055 aa; 1026 aa overlap; query 17-1026 aa; subject 5-1014 aa; similarity:fasta; SWALL:Q9P9Y1 (EMBL:AE004080); Xylella fastidiosa; type i restriction-modification sy DNA sequence : ATGATCGACTACAATTTTGTGCAGAGCGTCAGTAGCGGCGGCGGCTTCTCCGAAGGACTGGTTGAAGAAGTCGTTCTCGC GACATTTCAGGCGCTTGGTTATCTCTACCAGCCTTCGCAGGTGATCTCTCCGGATGGCTCTGCGCCAGCACGTCTCGCTT ATGGAGATGTGCTGTTGTCGGATATGCTTGCCGCTGCCGTCGAGCGCTTGAACCCCGACATCCCGGCAGATGCCTGCGAA CAGGCGATCCGGCAACTCTCGATCACGGAGACGCCATCCTTGGTCGAAGAGAACCGCCGCATTCATCGGCTGATCACCGA AGGCGTCGATGTGGAATTCGGCATCGGCGATGGCGAGGTGAAAGGCGACAAGGTCTGGCTGATTGACTTCGAACATCCGG AGAAGAACGAATTTCTCGTCACCAACCAGTTCACCCTCGCCGAGGGCAAACATACGCGGCGGCCTGACGTGATGGTTTTC GTCAACGGTCTGCCGCTCGGCATCATCGAGTTGAAGAATGCCGCGAGCAAGACCGCCACCATCGATCAGGCGTACCAGCA ACTTCAGACCTACAAGGAGCAGATCCCCTCTCTCTTCCGCACCAACGCCGTCTTGGTGGCGTCCGATGGCATGCTCGCGC GGATCGGGTCGCTAACGGCAGACGAAGAACGTTTCATGCCCTGGCGGTCGGTCACCGGGGCGGATGGCGACTTCACGCCC CACGGTCCATATGAGATGGATACGCTGCTGCGCGGTGTTTTCAATAAAGAACGCTTCCTGGCGCTGATCCGGGACTTCAC AGTGTTTGGCGATCGCGGTGAAGGTCCTTTTAAGATCATTGCCGGTTACCATCAGTTCCACGGCGCCCGCAAAGCCATCA CCAGCGCCATCGAGGCGGTGAAGCCGGAGGGCGACCGGAAGATCGGCGTGATCTGGCACACACAAGGCTCCGGCAAGAGC CTGCTGATGGCCTTTCTCGGCGGGCTGATCGTGCGATCCCGTGAGCTGGAAAACCCTACCCTGATCGTCCTGACTGACCG CAACGATCTGGATGACCAACTCTTCGGCACCTTCAGTCTGTGCAAGGACCTCATCCGCCAGACGCCGGAACAGGCCGACA GTCGCGACGATCTGCGTAAGCTGCTGAACCGCGCTTCCGGCGGCGTGATTTTCACCACGGTGCAAAAGTTCACACCCGAA AAGGGCGAGGAGGTGTTTCCGGTTCTGACCGAGCGCCGAAACGTTATCGTCATGGCGGATGAAGCGCACCGCAGCCAGTA CGGCTTTGACGCCAAGCTGAACCGGGAGACTGGTGAGCGCCGTTATGGCTATGCCCACCATATCCGTCAGGCGCTGCCGA ATGCCTCCTTCATGGGTTTCACGGGTACGCCGATCGAGGCGACGGATGTGAACACGCCGGCCATCTTCGGCGAATACATC GACATATACGACATCAGCCGCGCCGTTGAAGATGGCGCAACGGTGCCGATATACTATGAAAGCCGGCTTGCCCGGATTGA GCTGAATGAGGATGAAAAGCCGAAGATCGACGCCGCCATCGAAGCGATGCTTGAAGATGAGGCGCTGACCGAGCAGGAAA AGCAGAAAGCCCAGTGGACCACGGTTGAACGTCTGGTGGGCGCGGAAAAGCGCCTCAAGCAAATTGCAGCAGATCTCGTC GCGCATCTGCAAAGGCGGATAGAGGGTCTGCCCGGCAAGGCCATGGTCGTGTGCATGAGCCGCCGCATCTGCGTTGATCT CTACGAAGAGATCGTCGCCCTTCGTCCCGAATGGCACTCCGATGACGATGACAAAGGCGCCATCAAGATCGTCATGACCG GCTCGGCCTCCGATCCGCTCGACTGGCAACCGCATATTGGCAACAAGCGGCGGCGCGACGATCTCGCCAAGCGGGCAAGG AAGGTCGAGGACCCGCTAAAGCTCGTCATCGTGCGCGACATGTGGCTGACGGGGTTCGATGCGCCCTGCATGCACACGAT GTATGTCGACAAGCCGATGCGGGGCCACGGGCTGATGCAGGCGATCGCCCGCGTCAATCGCGTGTTCAAGGAAAAGCCGG GCGGTCTGGTCGTCGATTACATCGGCATCGCCACCAACCTGAAAAAGGCACTTGCCCAGTATTCCCAGTCCGACCGTGAC AAAACGGGGATCGATGAGGAACAGGCCGTCGCGCTCCTCTTGGAAAAATACGAAATCGTCCGCGGCATGTTCGCCGGCCA CGATTACAGTCTGGGCATTTCGGGAAAACCGTTCGAGCGGCTGAGAGCACTCGCCGACGGCATCGATTGGATTCTGAAGT GGCAGCAGGCGGAGGCCGCGAAAGTCGACAGTCAGGAGGCCAAGAAACGGGCCCACCGGCGATATCAGGATGCCGTTCTG GAACTCAGCAAGGCCTATGCGCTTGCCTCTGCTAGTGATGACGCCGCCGAGATCAGGGATGAGGTGGGTTTCTTCCAGGC TGTTAGAGCCGCGCTCGTCAAGACCACGGCCACCGGCAAGATCTCCGATAGGGCAAAGTCATTGGCCGTCGAGCAGCTTC TCAATCAGGCTGTGGCCAATGCCGAGATCGTCGACATCCTCAAAGCTGCGGGCCTCGATAGTCCCGATATCTCCGTTCTT TCCGACCAATTCCTCGCCGACATCCAGAAGATGGAGAAAAAGAACCTTGCCCTAGAGGCGCTGAAAAAACTGCTGAATGG CGAGATCAAGAGCCGCTCGAAATCCAACGTGGTCGAGGCCAAAACCTTTTCACGTCGGCTGGAGGAAGCGGTTGCCCGCT ACCATGCCAATGCCATTTCCACCGTCGAGATGATCCAGGAACTGATTGCCTTGGCAAAGGAGATGCAGGCCGCCTCCGCC CGTGGCGAAGAGATGGGGCTGACCCCGGAGGAAATTGCCTTCTACGATGCCTTGGCGGGCAATGACAGCGCGGTTGAGGC AATGGGCAGCGAGCAACTTCGTGTCATTGCCCATGAGCTCGTGGAGCAGATGCGTGGCTCGGTCACGGTCGACTGGCAGC ACAAGGCAAGTGCCCGAGCGAAAATGCGGATTCTGGTGAAGCGGATTTTAAAGCGGTTCGGCTATCCGCCGGACTTGGAG CAGGAGGCTGTCCAGACGGTGCTGGCCCAGGCAGAGCTGCTCCTGAAAGAGATTTCGGTCAGCAACAACAGGTAA Protein sequence : MIDYNFVQSVSSGGGFSEGLVEEVVLATFQALGYLYQPSQVISPDGSAPARLAYGDVLLSDMLAAAVERLNPDIPADACE QAIRQLSITETPSLVEENRRIHRLITEGVDVEFGIGDGEVKGDKVWLIDFEHPEKNEFLVTNQFTLAEGKHTRRPDVMVF VNGLPLGIIELKNAASKTATIDQAYQQLQTYKEQIPSLFRTNAVLVASDGMLARIGSLTADEERFMPWRSVTGADGDFTP HGPYEMDTLLRGVFNKERFLALIRDFTVFGDRGEGPFKIIAGYHQFHGARKAITSAIEAVKPEGDRKIGVIWHTQGSGKS LLMAFLGGLIVRSRELENPTLIVLTDRNDLDDQLFGTFSLCKDLIRQTPEQADSRDDLRKLLNRASGGVIFTTVQKFTPE KGEEVFPVLTERRNVIVMADEAHRSQYGFDAKLNRETGERRYGYAHHIRQALPNASFMGFTGTPIEATDVNTPAIFGEYI DIYDISRAVEDGATVPIYYESRLARIELNEDEKPKIDAAIEAMLEDEALTEQEKQKAQWTTVERLVGAEKRLKQIAADLV AHLQRRIEGLPGKAMVVCMSRRICVDLYEEIVALRPEWHSDDDDKGAIKIVMTGSASDPLDWQPHIGNKRRRDDLAKRAR KVEDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMRGHGLMQAIARVNRVFKEKPGGLVVDYIGIATNLKKALAQYSQSDRD KTGIDEEQAVALLLEKYEIVRGMFAGHDYSLGISGKPFERLRALADGIDWILKWQQAEAAKVDSQEAKKRAHRRYQDAVL ELSKAYALASASDDAAEIRDEVGFFQAVRAALVKTTATGKISDRAKSLAVEQLLNQAVANAEIVDILKAAGLDSPDISVL SDQFLADIQKMEKKNLALEALKKLLNGEIKSRSKSNVVEAKTFSRRLEEAVARYHANAISTVEMIQELIALAKEMQAASA RGEEMGLTPEEIAFYDALAGNDSAVEAMGSEQLRVIAHELVEQMRGSVTVDWQHKASARAKMRILVKRILKRFGYPPDLE QEAVQTVLAQAELLLKEISVSNNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
