|
Name : hsdM (pRL110098) Accession : YP_771130.1 Strain : Genome accession: NC_008384 Putative virulence/resistance : Unknown Product : putative type I restriction enzyme Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 112839 - 114398 bp Length : 1560 bp Strand : + Note : similarity:fasta; SWALL:T1MP_ECOLI (SWALL:Q47163); Escherichia coli; type i restriction enzyme ecoprri m protein; hsdM; length 520 aa; 537 aa overlap; query 14-513 aa; subject 15-511 aa; similarity:fasta; SWALL:Q9P9X8 (EMBL:AE004080); Xylella fastidiosa; DNA sequence : GTGGCGAAAGACAATAATGGCGACCTCGGCTTCACGGCCGAGCTTTTCAAGGCTGCGGACAAGCTTCGGGGCAATCTGGA GCCCTCGGAATACAAGCATGTAGCGCTTGGCCTTATTTTCCTGAAATACATATCCGATGCCTTCGAGGGGCTTCACGCCA GGCTGACGGCAGACGAATATGCCGATGCTGAAGACCCGGAGGAGTATCTCGCGGAGAATGTCTTCTGGGTGCCGACGGAG GCGCGGTGGCCTTTTCTGCAGGCCAACGCCAAGCGGCCGGAAATCGGCAAGCTGATCGACGAGGCGATGGAGGCAATCGA GCGTTTTCCGTCGAATGAGGGGCTGAAGGGCGTTCTTCCGAAGAACTACGCGCGTCCTACGCTCAACAAGACCATGCTCG GCGAGTTGATCGATCTTTTCTCCAATATCGGCCTTCATGACAGTAAAGATACGGCGAAGGATCTTCTGGGTCGTGTCTAC GAATATTTCCTTTCCGGTTTCGCCGGATCGGAAGGAAAGCGGGGAGGCGAATTCTTCACGCCGCGTTCCGTGGTGCGCAC TCTGGTCGAGATGCTGGAGCCCTACAAGGGCCGCGTCTACGATCCCTGCTGCGGTTCTGGCGGCATGTTCGTGCAGTCGG AGAACTTCATCGAGGAGCATGGCGGACGGCGCAATGATATTGCCGTCTATGGCCAGGAGATCAACCACACCACCTGGCGT CTGGCCAAGATGAACCTTGCCGTCCAAGGCATTGATGCCGATATTCGCTGGAACAACGAGGGCAGTTTCCACCGCGATGA ACTGCCGGACCTAAAGGCCGATTTCATCCTCGCCAACCCGCCCTTCAACATTTCCGATTGGGGCGGCGAGCGGCTGGCGG AAGACACCCGCTGGAAGTTCGGCAAGCCGCCGAATGGCAATGCCAATTTCGGCTGGCTGCAGCACATCATCCACCATCTT GCCCCGCGCGGCACGGCGGGCGTGGTGCTGGCCAATGGCTCCATGTCCTCCCAGCAGTCCGGCGAAGGCGAGATCCGCAA GGCGATGATCGAGAGGGATCAGGTGGATTGCATGGTGGCCCTGCCGGGTCAGCTCTTCTATTCCACGCAGATCCCCGCCT GTCTCTGGATTCTGGCTCGCGACAAGAGCGCCAATGGTCACCGTGACCGGCGCGGCGAAATCCTCTTCATCGACGCCCGC AAACTCGGCTTCATGGTGGACCGCGTGCGTCGCGAATTCACGGCAGACGATATCGAGAAGATCACCGGCGCTTATCATCG CTGGCGCTCGAAACCGGAAACGCGAGTGAACAACGGTTGGGCGGATTATGCGGACGAGCCGGGTTTCTGCAAGTCGGCCA GCCTTGAGGAAGTGCGCGGCCATGGCCATGTGCTAACGCCGGGGCGCTATGTGGGAGCGGCGGATGCCGAGGATGACGGG GTGTCGTTTGCGGAGAAGTTTGAAGGGTTGAGGGAGACCTTGATGGCCCAGTTCGAGGAGGGACGGAGGCTGGAGAAAGC GATCGAGGCAGCACTGGCGGCGGATTTACCAAATGCCTGA Protein sequence : MAKDNNGDLGFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEGLHARLTADEYADAEDPEEYLAENVFWVPTE ARWPFLQANAKRPEIGKLIDEAMEAIERFPSNEGLKGVLPKNYARPTLNKTMLGELIDLFSNIGLHDSKDTAKDLLGRVY EYFLSGFAGSEGKRGGEFFTPRSVVRTLVEMLEPYKGRVYDPCCGSGGMFVQSENFIEEHGGRRNDIAVYGQEINHTTWR LAKMNLAVQGIDADIRWNNEGSFHRDELPDLKADFILANPPFNISDWGGERLAEDTRWKFGKPPNGNANFGWLQHIIHHL APRGTAGVVLANGSMSSQQSGEGEIRKAMIERDQVDCMVALPGQLFYSTQIPACLWILARDKSANGHRDRRGEILFIDAR KLGFMVDRVRREFTADDIEKITGAYHRWRSKPETRVNNGWADYADEPGFCKSASLEEVRGHGHVLTPGRYVGAADAEDDG VSFAEKFEGLRETLMAQFEEGRRLEKAIEAALAADLPNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 8e-142 | 58 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 2e-141 | 58 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 7e-141 | 57 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 2e-111 | 47 |
