Gene Information

Name : pRL100238 (pRL100238)
Accession : YP_770518.1
Strain :
Genome accession: NC_008381
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4525
EC number : -
Position : 242545 - 243333 bp
Length : 789 bp
Strand : -
Note : similarity:fasta; SWALL:TAUB_ECOLI (SWALL:Q47538); Escherichia coli; taurine transport ATP-binding protein TauB; tauB; length 255 aa; 248 aa overlap; query 1-248 aa; subject 1-243 aa; similarity:fasta; SWALL:Q6RH56 (EMBL:AY498614); Paracoccus pantotrophus

DNA sequence : 
ATGCTTAAAGTCGATCACGCCAGCGTTTTCTTCGCAGCCCGCTACGGGCGGACCGTTCACGCGCTCGATCGCGTTTCCTT
CGATATTCCCGAACGGGGCTTCGTCGTCGCACTCGGCGCTTCGGGATGCGGCAAATCAACCCTTCTCAACGCGATTGCCG
GCTTCCTTCCGCTTTCGGATGGCCGGATCACGCTCGATGGCCGCGCGGTCGAACAACCCGGCGCAGATCGTGGCGTCGTT
TTTCAGAAAGATTCGCTGCTGCCTTGGAAATCGGTGATCGACAATGTCGCGCTCGGTTTGAAATTCGCCGGGGTCAAGCG
CAGGGAGCGCCAAGCGCGCGCCCTGGAGCTGCTCCGGCTCGTCGGTCTCGACGAATTCGCCGGCGCTTTTCCCTACGAGC
TGTCGGGCGGCATGCGCCAGCGTGTCGGCATCGCACGGGCTCTGGCAACAAATCCCGACATCCTGCTGATGGACGAGCCG
TTCGGCGCACTCGACAGCCTGACGCGCGAGCAGATGCAGGAACTGCTGGTTTCCATCTGGGATAAGACGGCAAAGAAGGT
CTTCTTCATCACGCACTCGATTGAAGAGGCCTTGTTCCTGGGCACGCAGGTCCTGGTCATGTCACCTCGACCGGGGCGCG
TCGTTGCACGCTTCGATCTGGATTTTGTTCGCCGCTTCGCCGAAACCGGCGACGCCCGATCAATCAAGGCGTCACCGCAA
TTTGCCGAGCTGCGCGAGGAGATCCGCGCCATTCTCCACAGCACCGAAGACCTCAGGAGCGCCGCATGA

Protein sequence : 
MLKVDHASVFFAARYGRTVHALDRVSFDIPERGFVVALGASGCGKSTLLNAIAGFLPLSDGRITLDGRAVEQPGADRGVV
FQKDSLLPWKSVIDNVALGLKFAGVKRRERQARALELLRLVGLDEFAGAFPYELSGGMRQRVGIARALATNPDILLMDEP
FGALDSLTREQMQELLVSIWDKTAKKVFFITHSIEEALFLGTQVLVMSPRPGRVVARFDLDFVRRFAETGDARSIKASPQ
FAELREEIRAILHSTEDLRSAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 9e-39 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pRL100238 YP_770518.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 3e-15 42