Gene Information

Name : sitB (RL3885)
Accession : YP_769463.1
Strain : Rhizobium leguminosarum 3841
Genome accession: NC_008380
Putative virulence/resistance : Virulence
Product : iron ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 4113099 - 4114004 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGTGCTGCTTGGCAATCTTGTCCGTCCCGCATCCTCGGATGCGGGATCGGGGATCACGGTAAAGGATGCGACCGT
CACTTACCGCAACGGACATACGGCCCTGAGGGACGCGAGTTTCCAGATCCCGACGGGCACGATCGCCGCGCTGGTCGGTG
TCAACGGTTCCGGCAAGTCGACGCTCTTCAAGTCGATCATGGGTTTCGTGCGTCTCGCCAGGGGCCACATTCGCGTGCTT
GGCATGCCGGTCGAAGAGGCGCTGCGCAAGAACCTCGTCGCTTATGTGCCGCAATCGGAAGAAGTCGACTGGAATTTCCC
GGTGCTGGTCGAGGATGTCGTGATGATGGGCCGCTACGGCCACATGGGCATGATGCGCATCCCGAAGGCCGCGGACCACG
AGGCAGTGGCCTCCGCGCTCGCCCGTGTCGCCATGAGCGAATTCCGCAAGCGCCAGATCGGCGAACTCTCCGGCGGTCAG
AGGAAGCGGGTCTTTTTGGCGCGAGCCCTGGCGCAGGACGGCCGGGTCATTCTGCTCGATGAACCCTTTACCGGCGTCGA
CGTAAAGACCGAGGACCAGATCATCAAGCTCCTGCGCGAACTGCGGGATGAAGGCCGCGTCATGCTGGTCTCCACCCACA
ATCTCGGCTCCGTGCCGGAGTTCTGCGACCGGACCATTCTGATCAAGGGCACGGTGCTCGCCTACGGCCCGACCGTCGAG
ACTTTTACGCAGGAAAATCTGGAAAAGACCTTTGGCGGCGTGCTGCGTCATTTCGTGTTCAGCGAAGCGCAGAACGGCAG
GCCAACGTCGATCGGCGTCATAACCGACGATGAGCGCCCCCTGATCATGCAGGGTGGCAAAGCGACCGCCCGGAGGTCCG
ATAGTGGCAATGGGGGCCGGGAATGA

Protein sequence : 
MTVLLGNLVRPASSDAGSGITVKDATVTYRNGHTALRDASFQIPTGTIAALVGVNGSGKSTLFKSIMGFVRLARGHIRVL
GMPVEEALRKNLVAYVPQSEEVDWNFPVLVEDVVMMGRYGHMGMMRIPKAADHEAVASALARVAMSEFRKRQIGELSGGQ
RKRVFLARALAQDGRVILLDEPFTGVDVKTEDQIIKLLRELRDEGRVMLVSTHNLGSVPEFCDRTILIKGTVLAYGPTVE
TFTQENLEKTFGGVLRHFVFSEAQNGRPTSIGVITDDERPLIMQGGKATARRSDSGNGGRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-84 74
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-85 74
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-85 74
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-85 74
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-84 74

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_769463.1 iron ABC transporter BAC0350 Protein 6e-85 74
sitB YP_769463.1 iron ABC transporter BAC0440 Protein 1e-73 62
sitB YP_769463.1 iron ABC transporter BAC0400 Protein 6e-45 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_769463.1 iron ABC transporter VFG0526 Protein 5e-85 74