Gene Information

Name : sitA (RL3884)
Accession : YP_769462.1
Strain : Rhizobium leguminosarum 3841
Genome accession: NC_008380
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 4112170 - 4113102 bp
Length : 933 bp
Strand : +
Note : -

DNA sequence : 
ATGCTCTATGGGGAAAGACGGTCGGTTTTGGCCGGAATGATAGGGGTGGCATTCGCAGCCGTGCTGGTTGCCTTTCCCGC
CGCTGCCCAACAGACAACCAATTCGAAGTTCAAGGTGGTGACGACCTTCACGGTAATTGCCGACATGGCAAAAAACGTGG
CCGGTGATGCCGCGATCGTGGAATCGATCACCAAGCCGGGCGCGGAGATCCACAACTATGCGCCGACGCCGGGTGACATC
CAGCGGGCCCAAGGTGCACAGCTCATTCTCTGGAACGGGCTCAATCTGGAGCGCTGGTTCGAAAAGTTCTTCCAGAACCT
GCACGACGTCCCCGGTGCCGTTGTCTCCGATGGCATCGAACCAATGGGCATCTCGGAAGGCCCCTACGAAGGCAAGCCCA
ATCCCCACGCCTGGATGTCACCGAAGAACGCCCTGATTTACGTCGACAATATCCGTGATGCTTTCGCAAAGTATGATCCG
GCGAATGCGGAGACCTACAAGGCTAACGCCGAGGCCTACAAGCAGAAGATCGAAGCGACGATCACTCCGATCCGCGCCAC
CCTCGAAAAAATCCCCGAGGACAAGCGCTGGCTGGTTTCAAGCGAGGGCGCCTTTTCCTATCTCGCACGCGATTTCGGGC
TGAAGGAACTCTATCTCTGGCCAATCAACGCCGACCAGCAGGGCACGCCCCAGCAGGTCCGCAAGGTGATCGATGCGGTG
AAGGAAAACCAGATCCCAACCGTCTTCAGCGAAAGCACCGTTTCCGATAAACCGGCCCGGCAGGTGGCGCGCGAAACCGG
CGCCCACTATGGAGGCGTGCTTTATGTCGACTCGCTGAGCGAAGCCGACGGCCCGGTGCCAACCTATATCGATCTTCTGC
GCGTGACCTCCGATACGGTCGCGAAGGGTCTTGCCGATGGGTTGTCGCAATGA

Protein sequence : 
MLYGERRSVLAGMIGVAFAAVLVAFPAAAQQTTNSKFKVVTTFTVIADMAKNVAGDAAIVESITKPGAEIHNYAPTPGDI
QRAQGAQLILWNGLNLERWFEKFFQNLHDVPGAVVSDGIEPMGISEGPYEGKPNPHAWMSPKNALIYVDNIRDAFAKYDP
ANAETYKANAEAYKQKIEATITPIRATLEKIPEDKRWLVSSEGAFSYLARDFGLKELYLWPINADQQGTPQQVRKVIDAV
KENQIPTVFSESTVSDKPARQVARETGAHYGGVLYVDSLSEADGPVPTYIDLLRVTSDTVAKGLADGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-105 77
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-105 77
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-105 77
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-105 77
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-105 77

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_769462.1 iron ABC transporter substrate binding protein BAC0349 Protein 1e-105 77
sitA YP_769462.1 iron ABC transporter substrate binding protein BAC0439 Protein 7e-96 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_769462.1 iron ABC transporter substrate binding protein VFG0525 Protein 1e-105 77