Gene Information

Name : RL1670 (RL1670)
Accession : YP_767274.1
Strain : Rhizobium leguminosarum 3841
Genome accession: NC_008380
Putative virulence/resistance : Resistance
Product : transmembrane efflux protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 1749654 - 1750841 bp
Length : 1188 bp
Strand : -
Note : -

DNA sequence :
ATGTCCTATCCCAAAATCCAGCAATGGACCTATTCCCTGCCCGCAGCCTTGCTGCTGATGGCACCGTTCGACATCCTGGC
CTCGCTCGCCATGGATATCTATCTGCCGATCGTGCCGGTCATGCCGGAGGCGCTCGGCACTTCGCCGGCCGTCATCCAGC
TGACCCTCAGCCTCTACATGCTCGTGCTCGGTGTCGGCCAGATCGTCTTCGGCCCAATTTCCGATATTGTCGGACGACGG
CCTGTCCTGCTTGGAGGTGCTGCACTCTTTGCCGCTTCATCCTTCCTGCTTGTCGGCTCCTCGTCGGCGCCGATCTTCGT
GGTCTTGAGATTGCTGCAGGCAGTCGGCGCGTCGGCGACCCTCGTCGCAACTTTCGCAACCGTGCGTGACGTCTACGCCG
GGCGCCCCGAAAGCAGCACGATCTATAGCCTTCTCGGCTCCATCCTCTCCTTCGTGCCGGCACTCGGCCCGATCATCGGA
GCCTTGATCGCGGATCGCTTCGGCTGGCGCGCCATCTTCCTCGTCATCGGCTTCCTTTCGGTTGTCGCCCTTTTCAACGC
CGGCATGCGATGGCACGAAACCCGCCCTGCCGTCACCGCGAAGATCGCTCTCCGCCCGATCCTTACAAGCCTTCCCTTCT
GGGTTTATACGGGCGGCTTCAGCACGGCGATGGGCGCCTTCTTCGTCTTCTTCTCGACGGCACCCCGTATCCTGATCGAC
AAAGCCGGTTTTTCCGGCATCGCCTTCAGCTTCATCTTTGCCACGGTGGCGCTGGTGATGATCGTGACGGCGCGTTTCGC
CAAGCGTTTCGTCATGCGCTGGGGCATTGCAGGTAGCCTTGCCAGAGGCATGTCAATGCTGCTTCTCGGCGCCGTTCTGC
TTGCTTTTGGAGAGTTGTTTCTGCAGCCTTCCCTGGTCAGCTTCGTCGTGCCGATGTGGATTATTGCGATAGGCATCGTC
GTTGCGACGGCGGTCACCGCCAACGGCGCGCTCGACGCCTTTGGCGACACGGCAGGAACGGCGGTCGCGCTCTATTTCTG
CGTCCAGAGCATCATCGTCGGCTTTGTCGGAACCTCCTTCGTGATTCTGCTCGGCGGCGACAGTGCCAGGCCGCTTGTGG
GCTATGTCTCAGCGACCGCGCTGACGACGTTGGCTGGATTGTGGTGCCTGCGGGAGCCGGCCCGATAG

Protein sequence :
MSYPKIQQWTYSLPAALLLMAPFDILASLAMDIYLPIVPVMPEALGTSPAVIQLTLSLYMLVLGVGQIVFGPISDIVGRR
PVLLGGAALFAASSFLLVGSSSAPIFVVLRLLQAVGASATLVATFATVRDVYAGRPESSTIYSLLGSILSFVPALGPIIG
ALIADRFGWRAIFLVIGFLSVVALFNAGMRWHETRPAVTAKIALRPILTSLPFWVYTGGFSTAMGAFFVFFSTAPRILID
KAGFSGIAFSFIFATVALVMIVTARFAKRFVMRWGIAGSLARGMSMLLLGAVLLAFGELFLQPSLVSFVVPMWIIAIGIV
VATAVTANGALDAFGDTAGTAVALYFCVQSIIVGFVGTSFVILLGGDSARPLVGYVSATALTTLAGLWCLREPAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
floR YP_005176183.1 florfenicol / chloramphenicol efflux protein Not tested ICEPmu1 Protein 1e-97 65
flo AAK02049.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 3e-98 64
floRc AGK06972.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 3e-98 64
floRc AGK07102.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 3e-98 64
cmlA CAJ77032.1 chloramphenicol and florfenicol resistance protein Not tested AbaR1 Protein 5e-95 63
cmlA9 ABZ01840.1 CmlA9 chloramphenicol efflux protein Not tested SGI2 Protein 5e-95 63
cml(A)5 ACY75522.1 CmLA(5) Not tested Tn6060 Protein 2e-72 50
cmlA5 CAJ77046.1 Chloramphenicol resistance protein Not tested AbaR1 Protein 3e-72 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RL1670 YP_767274.1 transmembrane efflux protein DQ522237.1.gene4.p01 Protein 1e-72 50
RL1670 YP_767274.1 transmembrane efflux protein NC_010410.6003586.p0 Protein 1e-72 50
RL1670 YP_767274.1 transmembrane efflux protein AF294653.1.gene4.p01 Protein 2e-72 50
RL1670 YP_767274.1 transmembrane efflux protein DQ984668.gene.p01 Protein 1e-72 50
RL1670 YP_767274.1 transmembrane efflux protein AF156486.gene.p01 Protein 2e-71 49