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Name : pRL90052 (pRL90052) Accession : YP_765345.1 Strain : Genome accession: NC_008379 Putative virulence/resistance : Virulence Product : putative polysaccharide biosynthesis O-antigen related protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 53932 - 55899 bp Length : 1968 bp Strand : + Note : similarity:fasta; SWALL:O87168 (EMBL:AB012957); Vibrio cholerae; wbfy protein; name=wbfy; length 646 aa; 631 aa overlap; query 13-639 aa; subject 10-630 aa; similarity:fasta; SWALL:Q7WYS3 (EMBL:AJ571701); Rhizobium leguminosarum bv. viciae 3841; putative DNA sequence : ATGCCGATGCAAGCGCTCGTCGCCCCTCTGCTGGCGATGCCGCGGGTTGCCAAACGCGCTCTGGCCTTGCTGCTGGATTC CAGCTTTTGTGTTCTGACGATCTGGCTGGCCTATTGTTTCCGCCTAAACGAATGGACGGTGCTGACAGGTGTGCAGTGGC TGCCGGTCTTCGTTTCGCTCTGTATGGCACTTCCCATCTTCATCGTCATGGGCATGTATCGGGCGATCTTCCGCTATGCC AATATGGCTGCTTTCATTACTGTTCTGAAGGCGATTGCGATCTACGGCGTCGCCTTCATGACGATATTTACAGCACTCAG CGTCCCCGGTGTTCCGAGAACCGTCGGCATCCTCCAGCCCTTCCTTCTGTTGATTGCGATCGGCCTGTCGAGGTTGAGTA TCCGCTACTGGCTCGGGGATGCCTACCAGCGCATCCTTCACAAGAATATGCTCGCCAAGGTGTTGATCTATGGGGCAGGG ACGGCCGGGCGGCAACTGGCCGGTGCCTTGATCAACAGTGCCGAACTCAATGTCGTCGGCTATCTGGATGATGATCCGCG TCTCAAGGGCGGCGTCATGGGTGGTTTGCCGATCTACGACCCCTCGGATCTTCCGGTGCTTGCCGAATCTCTCGGCGTGC ACAACGTGCTTCTTGCACTTCCCTCCGCATCGCGGCAGCGTCGCAACGAAATCCTGGAGCACATCCGTAAAGCCAGGGTC AATGTTCGCACGTTGCCGGATCTCACTGCCCTGGCTCAGGGACGCATCGCCGTCTCCGACATCCGAGAGCTGGAGATCGA AGATCTTCTGGGAAGAGAAGCGGTCGCGCCGCGCCAGGAGCTACTCGACAAGTCGATGCGCAACAAGGTGGTGATGGTCA CCGGTGCTGGCGGCTCGATCGGCGGCGAGCTATGTCGTCAGATTTTGCGCACCGGGCCTTCCAGCCTGATCCTCATCGAT CAGAACGAGTTTGCGCTTTACAATATCCATGCCGAATTGCAGAAGCTCGCCGAACTGTACAAGCATGAAAATATGCAGAT CGTTCCGATTCTGTGTTCTGTCCGCGATCAGGATCGCATGGAACATGTCATGCAGAGCTGGCGACCTCAGACGCTCTATC ATGCAGCCGCTTACAAGCATGTTCCCCTTGTCGAACACAATGCCGTGGAAGGCATCAAGAACAACGTGATGGGTACGTTG GTCGCGGCACGCGCGGCGAATAAATGCGGCGTCTCGAATTTCGTGCTGATCAGCACAGACAAAGCCGTGCGTCCGACAAA TGTGATGGGCGCCAGCAAGAGGCTGGCGGAGATGGTTCTGCAGGCGCTTGCGGCGGAATCGGCGACCGACAGAATGCGAA CGAATTTCTCCATGGTCCGTTTCGGAAACGTCCTCGGCTCCTCCGGATCTGTCGTGCCGCTTTTCCGGCAGCAGATCAAG GAGGGCGGCCCGGTGACACTGACACATCCTGATATAACCCGCTACTTCATGACCATTTCGGAGGCTTCTCAACTCGTCAT ACAGGCCGGCGCGATGGCGGAGGGCGGAGATGTCTTCCTGCTCGACATGGGAGAGCCGGTTCGCATCGCAGATCTCGCCC GCAAGATGGTGGAGCTTTCCGGGCTGGCCGTCCGGGACGAAGACAATCCCGAAGGCGATATCGAGCTGTCCGTTACCGGT CTTCGACCCGGCGAGAAGCTCTTTGAAGAGCTGTTGATCGGGGATAATCCTGAAACAACCGAACATCCTCGGATTATGAA GGCGCGCGAGGATTTCCTGTCCTGGGCGGAGCTGTCGCGAAGGCTCAACGCGCTCAACGCGGCGTTGGACCGGAACGATA TGATCGCTGCACGTGCGACATTGGCGGAGCTCGTTTCCGGCTATTCGTCAACGGGTGAGGTCTCGGATCTGGCTTTCACC GGCGCCGAGCCAATACGGCTACCTCAGACAATTCAAAGCAAGCTGTAG Protein sequence : MPMQALVAPLLAMPRVAKRALALLLDSSFCVLTIWLAYCFRLNEWTVLTGVQWLPVFVSLCMALPIFIVMGMYRAIFRYA NMAAFITVLKAIAIYGVAFMTIFTALSVPGVPRTVGILQPFLLLIAIGLSRLSIRYWLGDAYQRILHKNMLAKVLIYGAG TAGRQLAGALINSAELNVVGYLDDDPRLKGGVMGGLPIYDPSDLPVLAESLGVHNVLLALPSASRQRRNEILEHIRKARV NVRTLPDLTALAQGRIAVSDIRELEIEDLLGREAVAPRQELLDKSMRNKVVMVTGAGGSIGGELCRQILRTGPSSLILID QNEFALYNIHAELQKLAELYKHENMQIVPILCSVRDQDRMEHVMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTL VAARAANKCGVSNFVLISTDKAVRPTNVMGASKRLAEMVLQALAAESATDRMRTNFSMVRFGNVLGSSGSVVPLFRQQIK EGGPVTLTHPDITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKMVELSGLAVRDEDNPEGDIELSVTG LRPGEKLFEELLIGDNPETTEHPRIMKAREDFLSWAELSRRLNALNAALDRNDMIAARATLAELVSGYSSTGEVSDLAFT GAEPIRLPQTIQSKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-82 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-84 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pRL90052 | YP_765345.1 | putative polysaccharide biosynthesis O-antigen related protein | VFG0029 | Protein | 3e-111 | 48 |
| pRL90052 | YP_765345.1 | putative polysaccharide biosynthesis O-antigen related protein | VFG1300 | Protein | 3e-82 | 44 |
