Gene Information

Name : pRL90312 (pRL90312)
Accession : YP_765595.1
Strain :
Genome accession: NC_008379
Putative virulence/resistance : Resistance
Product : putative transmembrane attachment-related protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 340390 - 341124 bp
Length : 735 bp
Strand : -
Note : Similar, but truncated at the N-terminus, to Agrobacterium tumefaciens AttE; SWALL:O32734 (EMBL:U59485) (264 aa); similarity:fasta; SWALL:O32734 (EMBL:U59485); Agrobacterium tumefaciens; AttE; length 264 aa; 243 aa overlap; query 2-244 aa; subject 23-264

DNA sequence : 
TTGCGATCCCTCTCGAAAGTTCTTAGGTCACCGGAGGTTTTTGCATTCTGCAACTCCGTGTTCGAGAAGGCCGACATGAT
CCTGACCCTCGGAGGCGTTAGAAAATCCTATTCCACTGCCGAGGGCCCGATCGAAATCCTGAAGGGCGTCGATCTGGAAG
TCGCTGCGGGAGAAAGTGTTGCGCTAACCGGTGAGTCCGGTAGTGGCAAAAGCACATTGCTGCATCTGGCAGGCGGGCTC
GACCGGGCAGACAGCGGCTCGGTCGTGATGGATGGCAGCGATCTGGCGCTATTTGCAGAAAACGAACGGGCCCGATACCG
GAGAACCAGGGTCGGCCTTGTTTTTCAACAGTTTAATCTCATCCCATCCCTGAGCGTCGCAGCTAACATCTCGTTCCACG
CTAAGCTTGCAAACCGGTACGATCACGCTTGGGAAGCGCAGTTGGTCGAGAAACTGGGGCTGGAAGAATACACCGCCCGA
TATCCCGAGCAGCTTTCCGGAGGCCAACAGCAGCGCGTTGCAATCGGCCGAACCTTGGCTGCTCGACCTCCTCTTATCCT
TGCGGACGAGCCAACGGGCAACCTGGATGAGCAAACAGGCGATGCGGTCCTCGATCTGATGCTCAGCCTGGCCCGGACAG
TGGGATCGGCTCTGCTTCTCGTCACTCACTCCACCAGGCTCGCAGCTCGTCTGGACCGAACGGTGGTCCTTCGCGGTGGG
AAGATTGCCGAATGA

Protein sequence : 
MRSLSKVLRSPEVFAFCNSVFEKADMILTLGGVRKSYSTAEGPIEILKGVDLEVAAGESVALTGESGSGKSTLLHLAGGL
DRADSGSVVMDGSDLALFAENERARYRRTRVGLVFQQFNLIPSLSVAANISFHAKLANRYDHAWEAQLVEKLGLEEYTAR
YPEQLSGGQQQRVAIGRTLAARPPLILADEPTGNLDEQTGDAVLDLMLSLARTVGSALLLVTHSTRLAARLDRTVVLRGG
KIAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-36 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-37 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pRL90312 YP_765595.1 putative transmembrane attachment-related protein CP001581.1.gene798.p Protein 1e-38 43
pRL90312 YP_765595.1 putative transmembrane attachment-related protein NC_008702.1.4606598. Protein 1e-33 41