|
Name : pRL90184 (pRL90184) Accession : YP_765471.1 Strain : Genome accession: NC_008379 Putative virulence/resistance : Unknown Product : putative ATP-binding component of ABC transporter Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 203077 - 204786 bp Length : 1710 bp Strand : + Note : similarity:fasta; SWALL:O50270 (EMBL:AF242881); Agrobacterium tumefaciens; moad; name=moad; length 588 aa; 575 aa overlap; query 4-569 aa; subject 5-572 aa; similarity:fasta; SWALL:Q92M37 (EMBL:AL591791); Rhizobium meliloti; putative ATP-binding ABC trans DNA sequence : ATGAGCGGCTCCGTGCTGTCCGTCCGTGATCTCACCGTCAGGGCACATGTCGATTCCGGCCCGCGCACGCTGCTCGATGC GGTATCGCTCGACCTCGGCAAGGGCGAGATCCTCGGTCTGGTCGGCGAGAGCGGCTCGGGCAAGAGCCTGTTCTGCCGTT CCCTGGTGCGCCTGCTGCCCTCCTCGCTGCTGAAGATCGAAAGCGGTAGCGTGCTGCTCGAAGGGCGCGACCTCATGCGG ATCGACGATGGCGAGATGCTGAAAGTGCGCGGCGGCGAGATCGGCATGATCTTCCAGAACCCGACCAGCCATCTCGACCC TGTCATGCGGATCGGCGATCAGATCGCCGAGGGCATCCGCTACCATCAGGGCTTCAGTGCCCGCGAAGCCCGCACCGCGG CGACGGACATCCTGGCGCAGGTCGGTTTCCCCGATCCGAAACGCCAGTACGATAGCTATCCGCACGAATTTTCCGGCGGC ATGCGGCAGCGGGCGATGATCGGCGTGGCGCTGTCCTGTAATCCGAAGATCCTGATCGCCGACGAACCGACGACGGCGCT CGACGTGACCATCCAGGCGCAGATCCTGCGGCTGTTGATCGACATTCGCGACCGGCGCGGCCTGTCGATCATTCTGATCA CCCACGATCTTGGTATCGTCGCCCAGACCTGCGACCGCATCGCCGTGCTGCGCGGCGGCAAGCTCATCGAAGAGGGGCCG AAGCGGACGATCCTGGCGCGGCCGCAGCATCCCTATACGATCAACTTGATCAACAGCCACCCTTCCCTGCCGGGCGCGAT ATCAGCGCCGCTGCTCGAGATTGCCGAGGCCGGCAAACCGGCCAGGCCATTGCTCGAAATCGATGATCTCCACGTGCGCT TCAGAGCGGGCGGCGCCCTGCTCAGGGGCGGTGCCAAGACGGTCAGCGCCGTTGCCGGTGTTAGCCTGCAGATCATGCCG GGCGAGACGGTCGGCATCGTCGGCGAATCCGGCAGCGGCAAGAGCACGCTTGCCCGCGCCGTGCTCGGCCTCACCCCGCT TTCCTCGGGTCACGTCACTTTCGACGGCGTCGATCTGGCGCTGCAGAAAAGCGCTGGCCTGGCAAAGCTCAGGCGCGAGA CGGCGATGGTCTTCCAGGACCCCTATAATGCGCTCAATCCGCGGCTGACGATCGGGCAGATGCTGGCCGAGGTGCTGAAG GTGCAGGGCAAGGTCGCCAGGGCCGATATCCCTGTTCGAATCGGCGAACTGCTCGATCTCGTCGGTCTCGAACGCGAATT CGCCGGCCGCAAACCGCGCAGCATGAGCGGCGGCCAGTGCCAGCGCGCCGGCATCGCCCGTGCGCTCGCCGTCGATCCGA AGATGATCATCGCCGACGAATGCGTGGCCGCCCTCGACGTCACCATCCAGGCGCAGATCATCGAGCTCTTCCGCGATCTC ACGGCGAAGATGAACCTCACGCTGATCTTCATCGCCCATGATCTCGCAATCGTCCGCAATCTCTGCGAACGCGTCGTCGT GATGTATCGCGGCGAGATCGTCGAGGAAGGTCGCTCCGAAGAGGTCTTCGCGCGGCCGAAGCATCCTTATACGGCGGCGC TGATCGCCGCCATTCCCGACATCGATCCTGACAAGCGGCTGCTGCAAGGCGCCGACGGCAAGGACCATCCGCATTCGATG CCGATTCAATCAATCAAACGCATGCCATAA Protein sequence : MSGSVLSVRDLTVRAHVDSGPRTLLDAVSLDLGKGEILGLVGESGSGKSLFCRSLVRLLPSSLLKIESGSVLLEGRDLMR IDDGEMLKVRGGEIGMIFQNPTSHLDPVMRIGDQIAEGIRYHQGFSAREARTAATDILAQVGFPDPKRQYDSYPHEFSGG MRQRAMIGVALSCNPKILIADEPTTALDVTIQAQILRLLIDIRDRRGLSIILITHDLGIVAQTCDRIAVLRGGKLIEEGP KRTILARPQHPYTINLINSHPSLPGAISAPLLEIAEAGKPARPLLEIDDLHVRFRAGGALLRGGAKTVSAVAGVSLQIMP GETVGIVGESGSGKSTLARAVLGLTPLSSGHVTFDGVDLALQKSAGLAKLRRETAMVFQDPYNALNPRLTIGQMLAEVLK VQGKVARADIPVRIGELLDLVGLEREFAGRKPRSMSGGQCQRAGIARALAVDPKMIIADECVAALDVTIQAQIIELFRDL TAKMNLTLIFIAHDLAIVRNLCERVVVMYRGEIVEEGRSEEVFARPKHPYTAALIAAIPDIDPDKRLLQGADGKDHPHSM PIQSIKRMP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-67 | 41 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-67 | 41 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 7e-67 | 41 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-67 | 41 |
