Gene Information

Name : pRL120241 (pRL120241)
Accession : YP_764752.1
Strain :
Genome accession: NC_008378
Putative virulence/resistance : Unknown
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 252040 - 253674 bp
Length : 1635 bp
Strand : -
Note : similarity:fasta; SWALL:Q92X21 (EMBL:AL591985); Rhizobium meliloti; putative oligopeptide ABC transporter ATP-binding protein; length 548 aa; id=70.78; ungapped id=70.91; E()=3.6e-134; 534 aa overlap; query 1-534 aa; subject 1-533 aa

DNA sequence :
ATGGCTGAACATCTTTTGGAAGTGCGCGACCTCTCGGTCGAGTTCCACACCGCCAGCGGGACCGTCAAGGCGGTGCAGGA
TGTCAGCTGGCATCTCGATCGCGGCGAGACGCTGGCGATCCTCGGAGAAAGCGGTTCGGGCAAGTCCGTGTCGGCCTCGG
CGATCATGAACCTGATCGATATGCCGCCCGGCAAGATCACCAGCGGCACCATTCTCCTCAACGGCCGCGACATGCTGAAA
ATGACGCCCGAGGAGCGACGCTCGATCAACGGCGCCAAGATCGCCATGATCTTTCAGGACCCGCTCGCCCACCTCAATCC
GGTCTATCCGGTCGGCTGGCAAATCACCGAGATGATGACGACGCATGGCCAGTCGGCGGAGCGCGCCGGTGCGAGGGCGC
TCGAATTGATCGGGCGCGTCGGCATAAGCGATCCGCAGGCGGCGATGCGAAAGTATCCGTTCCAATTCTCCGGCGGACAG
CGGCAACGCCTGATGATCGCCATGGCGATCGCCTGCAAGCCCGATATCCTGATCGCGGATGAACCCACCACCGCGCTTGA
TGTGACGGTGCAGGCGCAGGTGCTCGAACTTCTGCAGGAGCTGCAGCAGGAAACCGGCATGGGCCTGTTGCTGATCACCC
ATGATTTGGGCGTCGTTGCCGAGATCGCCGACCGCGTCGTGGTAATGAACTCGGGCTGCGTCGTCGAAACCGGCAATGCG
GCCGAAGTCTATCGCAACCCGCAGAACGCCTATACGAAGAAGCTGATAGCCGCCGCACCCGGGAAGGGTGCGATGGCGCA
GGAGCGCGACCGGCAGGGCGAACCGCTGCTGCGCGCCATCGGCTTGAAAAAGAGTTTTGGCGCATTCCAGGCGCTGAAGG
GCGTGGATTTCGTCATCATGCCCGGCGAAACTGTTGCCGTTGTCGGCGAGAGCGGTTCCGGCAAGTCGACCCTTGCCCGG
GCAATCGTTCGCCTCGATGATCCGCAGGAGGGCCAGGTTCTCTACCGCGGCAACGATCTGCTTGCGATGACCCCTCGAGA
AATATTCGGGCTGCGTCGCGATTTGCAGATGGTCTTTCAGGACCCGACCCAGTCACTCAACCCGCGGATGAGCGTGTTCC
GGTTGATTTCCGAGGCCTGGGTCATTCACCCGGATATCCTGCCGAAAGCGAGATGGAAGGAGAGAGTGGCCGAGTTGCTG
GTCAAGGTTGGGCTGAAACCGGATATGGCCGACCGGTATCCACATCAGTTTTCCGGCGGCCAGCGCCAGCGCATCGCCAT
TGCCCGGGCGCTGGCGATGGAACCGAAACTGATCATCTGCGACGAGGCGGTTTCGGCGCTCGACGTGTCGATCCAGGCAC
AGGTGATTGCCCTGCTTGAGGGCCTGCGTCGCGAATTCGGCCTGTCCTATCTCTTCATTGCGCACGACCTGCCGGTGGTT
CGCGATTTCGCCGATCGCGTCATCGTCATGAAGGCCGGCGAGATTGTCGAAGAGGGGCCGGTGGAGCAGATCTTCAACGC
GCCCTCCCACCCCTACACGCAGGCGCTTCTTGCCGCGAGCCTCGATCCCGATCCGGAGATCCAGGCCACCCGACGCGCCG
CCCGCCAACGACAGGAAGGACTCGTTTCCGCATGA

Protein sequence :
MAEHLLEVRDLSVEFHTASGTVKAVQDVSWHLDRGETLAILGESGSGKSVSASAIMNLIDMPPGKITSGTILLNGRDMLK
MTPEERRSINGAKIAMIFQDPLAHLNPVYPVGWQITEMMTTHGQSAERAGARALELIGRVGISDPQAAMRKYPFQFSGGQ
RQRLMIAMAIACKPDILIADEPTTALDVTVQAQVLELLQELQQETGMGLLLITHDLGVVAEIADRVVVMNSGCVVETGNA
AEVYRNPQNAYTKKLIAAAPGKGAMAQERDRQGEPLLRAIGLKKSFGAFQALKGVDFVIMPGETVAVVGESGSGKSTLAR
AIVRLDDPQEGQVLYRGNDLLAMTPREIFGLRRDLQMVFQDPTQSLNPRMSVFRLISEAWVIHPDILPKARWKERVAELL
VKVGLKPDMADRYPHQFSGGQRQRIAIARALAMEPKLIICDEAVSALDVSIQAQVIALLEGLRREFGLSYLFIAHDLPVV
RDFADRVIVMKAGEIVEEGPVEQIFNAPSHPYTQALLAASLDPDPEIQATRRAARQRQEGLVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 8e-72 42
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 8e-72 42
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 8e-72 42
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 8e-72 42
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 3e-88 42