Gene Information

Name : HNE_0908 (HNE_0908)
Accession : YP_759635.1
Strain : Hyphomonas neptunium ATCC 15444
Genome accession: NC_008358
Putative virulence/resistance : Virulence
Product : SMR family multidrug efflux pump
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 924794 - 925138 bp
Length : 345 bp
Strand : +
Note : identified by match to protein family HMM PF00893

DNA sequence : 
ATGAACCCGGCCCTGATTACCTATGGCGCGCTCGGCATCGCTATCATGTTCGAGATCATCGGCACAACGCTGCTTCAGCA
AAGCCAGCAGTTCACCCGCTGGCTGCCCACGCTCGGCATGGCGCTCTGCTATGGCGCGGCCTTTTACTTCCTCTCCATCG
CGCTGAAGACGATTCCCGTGGGCGTCGCTTATGCCATCTGGAGCGGCATGGGCATCGTTCTCATCGCGCTCATTGGCCTG
ATGCTGTTCGGCCAGAAACTGGACCTTCCAGCGATCATTGGTATGGCAATGATTATCGGCGGCGTCGTGGTAATGAATCT
ATTCTCTAAAACCGTGTCTCACTGA

Protein sequence : 
MNPALITYGALGIAIMFEIIGTTLLQQSQQFTRWLPTLGMALCYGAAFYFLSIALKTIPVGVAYAIWSGMGIVLIALIGL
MLFGQKLDLPAIIGMAMIIGGVVVMNLFSKTVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 1e-10 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HNE_0908 YP_759635.1 SMR family multidrug efflux pump CP001138.1.gene1489. Protein 2e-15 58
HNE_0908 YP_759635.1 SMR family multidrug efflux pump NC_002695.1.913273.p Protein 3e-16 54
HNE_0908 YP_759635.1 SMR family multidrug efflux pump BAC0150 Protein 3e-16 54
HNE_0908 YP_759635.1 SMR family multidrug efflux pump BAC0377 Protein 1e-14 53
HNE_0908 YP_759635.1 SMR family multidrug efflux pump BAC0002 Protein 5e-14 53
HNE_0908 YP_759635.1 SMR family multidrug efflux pump NC_010410.6003348.p0 Protein 5e-14 53
HNE_0908 YP_759635.1 SMR family multidrug efflux pump CP004022.1.gene1549. Protein 1e-12 49
HNE_0908 YP_759635.1 SMR family multidrug efflux pump BAC0139 Protein 2e-12 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HNE_0908 YP_759635.1 SMR family multidrug efflux pump VFG1586 Protein 4e-11 41