Gene Information

Name : HNE_0538 (HNE_0538)
Accession : YP_759268.1
Strain : Hyphomonas neptunium ATCC 15444
Genome accession: NC_008358
Putative virulence/resistance : Unknown
Product : ISHne1, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 532986 - 533891 bp
Length : 906 bp
Strand : -
Note : identified by match to protein family HMM PF00665

DNA sequence : 
ATGATCGCGTTCATTGACGACCATCGCGATGTTTATGGGGTCGAGCCGATCTGCAGGGTATTGCCGATTGCCCCATCAAC
CTTTCATGAGGCGGATGCGCGGCGGCGGCGCCCCGACCGCAGGCCGCCGCGCATCCGCCGGGACGAGACGCTGAAGCCGG
AGATCCTTCGGGTCTTCAACGAGAACTTCACCGTCTATGGCGCTAACAAGGTCTGGCACCAGATGAAGCGGGAAGGCTTT
GACGTGGCCCGCTGCACCGTCAGGCGCCTGATGAAGGCCATGGGTCTGAAGGGCATTATCCGCGGCAAGCCGCATCGCAC
GACCTACAGCGACAAGGTAGCGCCGTGCCCGCTCGACCATGTGAAGCGCAACTTCAAGGCTCCGGCGCCGAACCGGCTCT
GGGTCAGCGATTTCACCTACGTCTCGACCTGGGCTGGATTTGTCTACGTCGCCTTCGTCATTGATGTGTTCGCCCGCCGC
ATTGTCGGCTGGCGGGTCAGCCGGACAGCGCATGCGCGCTTTGTACTCGATGCTCTTGAGCAGGCCCTGCATGACCGGCG
GCCGGGCATCGGCAGCGGACTTGTTCATCACTCGGATCGTGGCAGCCAGTATGTCAGCATACGGTATACGGAGCGTCTGG
CGGAGGCAGGCCTCGAGCCGTCGGTCGGCAGTGTCGGCGATAGTTATGACAACGCCCTCGCCGAGACGATCAATGGACTC
TACAAGGCCGAAGTCATCTGGCGGAAAGGCCCTTGGAAATCCATGGACGCCGTCGAATACGCCACGCTCGAGTGGGTCGA
CTGGTTCAATCACCGCCGCCTGCTCGAGCCGATCGGAAACATCCCTCCGGCAGAAGCCGAGGCCAATTACTTTGCAGCCC
TAAAGGAAAACGCTACCGCTGCATGA

Protein sequence : 
MIAFIDDHRDVYGVEPICRVLPIAPSTFHEADARRRRPDRRPPRIRRDETLKPEILRVFNENFTVYGANKVWHQMKREGF
DVARCTVRRLMKAMGLKGIIRGKPHRTTYSDKVAPCPLDHVKRNFKAPAPNRLWVSDFTYVSTWAGFVYVAFVIDVFARR
IVGWRVSRTAHARFVLDALEQALHDRRPGIGSGLVHHSDRGSQYVSIRYTERLAEAGLEPSVGSVGDSYDNALAETINGL
YKAEVIWRKGPWKSMDAVEYATLEWVDWFNHRRLLEPIGNIPPAEAEANYFAALKENATAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 6e-57 65
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-60 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-60 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-69 64
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 5e-74 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-73 61
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-73 61
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-73 61
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-73 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-74 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-75 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-75 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-75 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-74 61
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-75 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-74 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-74 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 7e-75 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 7e-75 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-75 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-51 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-72 59
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 8e-42 47
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-53 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HNE_0538 YP_759268.1 ISHne1, transposase orfB VFG1602 Protein 1e-72 59