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Name : gspE (HNE_1866) Accession : YP_760567.1 Strain : Hyphomonas neptunium ATCC 15444 Genome accession: NC_008358 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1932754 - 1934244 bp Length : 1491 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 DNA sequence : ATGGCGCGCGCTCAGGTCACCTACTCATTTGCCCGCGACAAGGGGATTGTTGTTATCCCCGGCCGGTCGGATTTGACGTT TGCCGTTCGCGAGGGCGCAGACCCGGCCGCGCTGCTTGAGGCGCGCCGCGTCACCGGACTCCCGGTGCATCTGGAAGCCA TGAATTCTGCCCAGTACGAGCGCCAGTTGTCGGAGAGCTTCGGTCAAGGGCGGCTTGACGGCAGCGCTGCCGAAGCCGCC GCCGGAACGGGCGGCGACCTGGAAAGCCTGTTTGACGGCCTTCCGCAAACGGAAGACCTTTTGGCCGGTGACACCGAAGC CCCCATCATCACACTTATCAACGGCCTGCTTCAGGACGCCATCCGTCGCCGGGCATCTGATATTCATATTGATCCATTTG AAGACAAAATGTCTGTCCGTTACCGGATTGATGGCGAGCTACAGGAAGTCTTCACGGCGTCCCGCCGCGTTGCCGCCCCG CTGGTTTCACGCATCAAGGTGATGAGCCGCCTTGATATTGCAGAGAAACGCATGCCCCAGGACGGCCGCATCTCGTTGAC GCTCGGTGGTCGCGCTCTGGATGTTCGTGTCGCGACCCTTCCAACACGCTACGGCGAACGGGTTGCCTTGCGTATACTCG ATACCAAACAGGCATTGCTTGGTCTCGAAACCCTCGGCATGGACGAAAACACGGAGAAGCGTTTTCGCACGGCATTGAGC GAGCCCAACGGCGTGATCCTGGTAACCGGCCCCACGGGCTCGGGCAAAACCACCACGCTTTATTCCGCCCTTGCCCAGCT CAATACCGGTCGCGTCAATATCATGACGCTGGAAGACCCGGTAGAATACGGCCTCGACGGGATCAGCCAGACCCCGATGG ATCACAAGGTCGGCCTCACCTTTGCCGCCACACTGCGCTCGATCCTCCGGAATGATCCCAACATCGTCATGGTCGGCGAA ATTCGCGATGCGGAGACCGCCGAAGTTGCGCTTGAGTTTGCGCTGACCGGACGCCTCGCCCTGTCCACCATCCACACGAA CAGCTCGGCAGGGGCGATCACGCGTCTGCGCGACATGGGCGTGGAAAGTTTTCTGCTTGCCTCCACGATGCGTGCAATCC TGGCCCAGCGGCTGGTGCGCCGCCTGTGCGTTCATTGTAAGGAAGCTTACGCCCCACCCCCAGCTCTGTTGGAGCGGCTG GGCCTTGAAGACCGGGCAGACCTGACCCTTTACCGGCCGGTCGGCTGCGCTTCGTGCGGGCAGACGGGTTATGAAGGCCG CCTCGGTGTTTATGAACTTCTGCTTGTGGATACCGCGATCCGCCGCATGATCCATGAGGGGGCAACCGAAGAGCAGATTG AGCGCTCAGCCTTCGCCAAATCTGATATGCTCTTCCAGAATGGACTGCGGCATGTGTTGAGCGGCGACTCAAGTGCTGAG GAGTTGCTGCACGTCTGCCGCCGGGAGGCGTGGTTCGGTGGCAGCGTTTGA Protein sequence : MARAQVTYSFARDKGIVVIPGRSDLTFAVREGADPAALLEARRVTGLPVHLEAMNSAQYERQLSESFGQGRLDGSAAEAA AGTGGDLESLFDGLPQTEDLLAGDTEAPIITLINGLLQDAIRRRASDIHIDPFEDKMSVRYRIDGELQEVFTASRRVAAP LVSRIKVMSRLDIAEKRMPQDGRISLTLGGRALDVRVATLPTRYGERVALRILDTKQALLGLETLGMDENTEKRFRTALS EPNGVILVTGPTGSGKTTTLYSALAQLNTGRVNIMTLEDPVEYGLDGISQTPMDHKVGLTFAATLRSILRNDPNIVMVGE IRDAETAEVALEFALTGRLALSTIHTNSSAGAITRLRDMGVESFLLASTMRAILAQRLVRRLCVHCKEAYAPPPALLERL GLEDRADLTLYRPVGCASCGQTGYEGRLGVYELLLVDTAIRRMIHEGATEEQIERSAFAKSDMLFQNGLRHVLSGDSSAE ELLHVCRREAWFGGSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-107 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-107 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_760567.1 | general secretory pathway protein E | VFG0182 | Protein | 7e-109 | 50 |
| gspE | YP_760567.1 | general secretory pathway protein E | VFG1876 | Protein | 5e-108 | 48 |
| gspE | YP_760567.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-107 | 47 |
| gspE | YP_760567.1 | general secretory pathway protein E | VFG0112 | Protein | 6e-79 | 45 |
| gspE | YP_760567.1 | general secretory pathway protein E | VFG2426 | Protein | 5e-71 | 44 |
