Gene Information

Name : Sfri_0090 (Sfri_0090)
Accession : YP_748791.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 103823 - 104506 bp
Length : 684 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator

DNA sequence : 
ATGACTATGCGTATTTTATTGGTTGAAGATGATGCTACTACGTTAAAGTATGTAGCCGACGGATTTACGGCTCAGAAATA
TCAAGTTGATAGCGCGACAGATGGCCAAGAAGGCCTCACGTTAGCTAAACATAACCAATATGATTTACTGATCCTCGATC
GCATGTTACCAAAGCTAGACGGCTTAACATTATTGTCTGCTCTGCGTACCAGTGGTAATAAAACACCAGTACTTATTTTA
TCGGCATTAAGCCATGTTGATGAGCGTGTAAAAGGTTTACGTGCGGGTGGTGATGATTACATGACCAAGCCATTTGCCTT
TGCTGAATTGTTAGTACGTGCTGAAAAACTTGCGCAACGTAACGTGGTTGAACCCGCTGCCACTGAAATTGAAGTGGGCA
GTTTAAAAATGGAATTATTAACTCGTAAAGTCACCCTTGACGATAGCGAGTTAATGCTTCAACCAAAAGAATTTCAATTG
CTTAAATACTTAATGGAACATCCTAATCAAGTGATTAGCCGTACATTATTATTTGAAGCAGTGTGGGACTACCATTTTGA
TCCTCGCACCAACGTGATTGATGTACATATTGCCAAGTTACGTCGCAAATTTGAAGAACTTGGTCACGGTGAGTTAATTG
AAACCGTTAGAGGGGCTGGATATCGCCTTTGTAAAAGGCATTAA

Protein sequence : 
MTMRILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLPKLDGLTLLSALRTSGNKTPVLIL
SALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNVVEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQL
LKYLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLCKRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-41 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0347 Protein 3e-42 43
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0111 Protein 6e-45 43
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0308 Protein 2e-41 43
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0125 Protein 3e-40 42
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0083 Protein 4e-41 42
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0197 Protein 2e-38 42
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein BAC0638 Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein VFG0596 Protein 2e-41 44
Sfri_0090 YP_748791.1 two component transcriptional regulator, winged helix family protein VFG1389 Protein 5e-36 44