Gene Information

Name : Sfri_0663 (Sfri_0663)
Accession : YP_749361.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 773452 - 774369 bp
Length : 918 bp
Strand : +
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD

DNA sequence : 
TTGGATACCGCTTTGGCCAAACCTGTTTATCAACCCGATCCTTTAATTAACCAGTTTCTTGATGATTTATGGTCAACTAA
CGGGCTAAGTGATAATACCTTGGTATCTTATCGTACAGATTTACAAAATGCAGAACGTTACATTTTGACTAAAGGTAAGG
ATTTGCTGCAAGTTGACCAGGCCTTACTGCGTGACTATCTTGCTGAACGTTTTGATAAGCAATTTGCTAAAAGTAGTACA
GCGAGACTTCTCAGTAGTTTACGGCGTTTTTATGCTTACTTATTAGTTAAGCAGAAAATTAGCCAAGACCCGACTGCATT
AATCAAGTCACCTAAGCTCGTTCGCCAATTACCGGATACATTGTCTGAAGCGCAAATAGACAATTTGTTATCAGAGCCAA
ATATTGATGATCCGATCGAGCACCGAGATAAAGCCATGTTAGAGCTTTTGTATGCCACAGGGCTGCGGGTGACTGAATTG
GTAAGTTTAACGATGGAGCAGATTAGTTTGCGCCAAGGTTTAGTGAGGGTGATGGGTAAAGGAGGCAAAGAGCGTTTGGT
CCCTTTAGGTGAACTGGCCATTACAGCTGTTGAGCAGTACATCAAGTTTGCTCGTGCTGAACTATTAAGTATGAAACAGT
CTGATGTTTTGTTTCCCTCTCGCCGTGGGCAAATGATGACCAGACAAACCTTTTGGCATCGAATTAAATTGTATGCGGCC
AGAGCCGGTATTCAATGTCATCTATCTCCACATACGTTACGCCATGCTTTTGCTACCCATTTACTTAACCATGGCGCAGA
TTTACGTGTGGTACAATTGTTACTCGGTCACAGTGATTTATCGACCACTCAAATTTATACACATGTTGCTAAAGTACGCT
TACAGCAACTACATAGCCAACATCATCCACGCGGTTAG

Protein sequence : 
MDTALAKPVYQPDPLINQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKGKDLLQVDQALLRDYLAERFDKQFAKSST
ARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQIDNLLSEPNIDDPIEHRDKAMLELLYATGLRVTEL
VSLTMEQISLRQGLVRVMGKGGKERLVPLGELAITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAA
RAGIQCHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVRLQQLHSQHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 6e-56 58
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 6e-56 58