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Name : Sfri_3916 (Sfri_3916) Accession : YP_752580.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Virulence Product : Fis family two component sigma-54-specific transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 4676157 - 4677545 bp Length : 1389 bp Strand : - Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator DNA sequence : ATGAGTCCAGATGAACATATCTCCCCAGTAAGCAAGACCACTATGTCGGTTCTTATCGTTGATGATGAGCCCGGTATGCG TAGTTTTTTGATGAAAGCCTTGGCAAAAAAGTTTGCCTTGGTAGAAACCGCCTCCACAATTGCCCAAGCAGAAGAATTAC GCAGTCACGGCCATTTCGATTTGTTAATTGTTGATATTCGTTTGCCCGACCGTTCAGGTATTGAGTGGCATGAAGCGTTA GATGATCCCGAACGTCAATCTGATATCATTTTTATGACCGGTTATGCAGACATGGACGTGGCAATCAAAGCATTACGTGC AGGTGCCTCTGATTTCATCATGAAACCGTTTCACTTAGAGCAAATGATTACCGCCGTTGACCGCTGTATCGAAAAACGAC TGCTAAAGCGTGAAAACTTTATGTTAAGGCGTGAACTGTCGCACGGACAGTCATCCACCATTATCGGCAACAGTGAAGCC ATCCGTGATGTTAAAGAGGTCATTGAGCGAATCGCACCGACTAACGCAGTTGTATTAATTGAGGGCGAATCAGGCACAGG TAAAGAGCTGGTGGCCAGACAATTACATCAACAGAGTGGCCGAAGTGGTGCGTTTGTACCAGTAAACTGTGGTGCCATCG CCCCTGAATTGTTAGCAAGTGAACTGTTCGGCCATACAGCGGGCGCTTTTACCGGGGCTAAAGGTAATCGTGAAGGGTTA TTTAGTTATGCCTCGGGCGGCACGATATTTCTGGACGAAATTGGCGAAATGCCGATGAACATGCAAACCGCCTTACTCAG AGTGCTCGAACAACGTGCTATTCGTCCTGTAGGAAGCGAAAAAGAAATCGACATTAATGTGCGCGTTATCGCGGCCACTA ATCGTTTATTAATTGATGAAGTTGAAGCGGGTCGTTTCAGACGTGATTTATTTTATCGTTTGAATGTATTGAACATTGTT ATTCCATCTTTGCGCTCTCGGCCAGAAGATGTTGTTGAGCTTACCCATTATTTTACCTTGCAGTTGTCACAAGAGTTGGG CATTAAAGATGTTATTTGGAGCCACGAAGACCTACAAGTACTGCAACAGCATGATTGGCCCGGTAATATTCGTGAACTGC GTAATATGATTGAACGATGCATCCTATTAGGTAAACCGCCTGCGGAATATTGGAAGAAACCTGTGTCTGTTATGGTTAAT GATGCGATGGGCTATCCGCTAAGTTGGCCATTAAAAGAAGTTGAAAAACAACATGTCACCAAAGTGGTCGATAGCCATAG TGGTAATAAATCTGCTGCAGCGCGAGATTTAGGTGTGTCACGAAAAACCTTAGATAGAAAATTTAAAGATTGGCTAACTC ACGAAAAACAAGGTCTTGAGGAAGAATAA Protein sequence : MSPDEHISPVSKTTMSVLIVDDEPGMRSFLMKALAKKFALVETASTIAQAEELRSHGHFDLLIVDIRLPDRSGIEWHEAL DDPERQSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMITAVDRCIEKRLLKRENFMLRRELSHGQSSTIIGNSEA IRDVKEVIERIAPTNAVVLIEGESGTGKELVARQLHQQSGRSGAFVPVNCGAIAPELLASELFGHTAGAFTGAKGNREGL FSYASGGTIFLDEIGEMPMNMQTALLRVLEQRAIRPVGSEKEIDINVRVIAATNRLLIDEVEAGRFRRDLFYRLNVLNIV IPSLRSRPEDVVELTHYFTLQLSQELGIKDVIWSHEDLQVLQQHDWPGNIRELRNMIERCILLGKPPAEYWKKPVSVMVN DAMGYPLSWPLKEVEKQHVTKVVDSHSGNKSAAARDLGVSRKTLDRKFKDWLTHEKQGLEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 3e-61 | 41 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 3e-61 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfri_3916 | YP_752580.1 | Fis family two component sigma-54-specific transcriptional regulator | BAC0089 | Protein | 5e-68 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfri_3916 | YP_752580.1 | Fis family two component sigma-54-specific transcriptional regulator | VFG1214 | Protein | 1e-67 | 41 |
