|
Name : Sfri_3407 (Sfri_3407) Accession : YP_752082.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Unknown Product : ribokinase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0524 EC number : - Position : 4056706 - 4057980 bp Length : 1275 bp Strand : + Note : TIGRFAM: ribokinase; PFAM: regulatory protein, DeoR; PfkB domain protein; Helix-turn-helix, type 11 domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: ecc:c2492 putative carbohydrate kinase DNA sequence : ATGTTAAGCTCTTGTCTTTATCACAACTTATTTTCTGCAAAAGCACTATATTTCATTATGAAAAAACTAAGTCGAAATGA AAGACTGGCTGTTATTCTCAAGTTGCTTAACATGCATAAAGAACTGTCTAACCAAAAAATATCCACATTACTGGCGGTAA CCGCTAAAACGGTTCGTTGTGATCTCGTTCAACTGGAAAAAGACGGCCTGGTAAAACGAGTTCATGGCGGAGTCAGTCAG TCTGAAGGGGTGGATATCAAAAAGTATAGCTTGGATGCCATGCTGGCAGAATTACTCGACCGCAGCATACTGAACGACAG CATGGCACTCGACTCAAACCAAGGTAGATTAATCAAAATGAAACATAATGTATTTGTACTTGGCTCATTCAATGTCGATA TTGTTGCGAATCTAGCACGTTTCCCCCAACCAGGTGAGACCTTGCATTCAAGTAGCAGCAGTATTGGCGCTGGCGGCAAA GGGGCAAACCAAGCTTATGCTGCGGCTAAAAATGGTGCCAATGTTAGCTTCATGACTAAAATTGGTACTGATCAATTTAG CCAATTTGCGCGCCAACATCTCAGCAGTACCGGCATAGACAATACGATTATCCTCGAGTCCTCAACTAGCCCGACTGGTA CCGCGCTGATTTATGTTAGTGAACAAGCTGGCGAGAATATGATTGCGGTCAACGAAGGCGCAAACATGACGCTGACCGAT GATGAAATACACTCAGCCAAACAGCATATTATTAATGCACAACTGTTTTTAACCCAACTTGAAACCAACTTTGATGCTAT CAAGCTCGCGATGAGCATTGCCAAAGACAACGGTGCTAAAGTAATCCTCAATCCGGCGCCATATCATCAAAGAACTCTCG AGTTATTACCTTTAGTTGATATGATCACTCCTAATGAAACAGAAGCTTCGTTAATGACTGGGATCGAAGTAACCGATCTA GACAGTGCTAAGCAGGCCGCTATTGCAATACATGCCTTAGGCGTAACGTCGGTGGTGATTACTCGCGGATCTGATGGGGT ATTACTTTATGAAAACGATCAATTTACCCTAATCGAGGTGTTAAAAAGCGCGGTTGTAGATACCACTGGTGCAGGCGATG CTTTTAATGGCGCTTTGGTCGCCGAGCTTGCTAGAGGCAGTACACTGCATCAGGCCGCTAAATATGCCAACGCTTATGCG TCACTCGCTGTTGAGCGCCTAGGCGCAGCAAACATGCCAGATGGCTCACTTGTCGCAGCTAGACTTAATGCTTAA Protein sequence : MLSSCLYHNLFSAKALYFIMKKLSRNERLAVILKLLNMHKELSNQKISTLLAVTAKTVRCDLVQLEKDGLVKRVHGGVSQ SEGVDIKKYSLDAMLAELLDRSILNDSMALDSNQGRLIKMKHNVFVLGSFNVDIVANLARFPQPGETLHSSSSSIGAGGK GANQAYAAAKNGANVSFMTKIGTDQFSQFARQHLSSTGIDNTIILESSTSPTGTALIYVSEQAGENMIAVNEGANMTLTD DEIHSAKQHIINAQLFLTQLETNFDAIKLAMSIAKDNGAKVILNPAPYHQRTLELLPLVDMITPNETEASLMTGIEVTDL DSAKQAAIAIHALGVTSVVITRGSDGVLLYENDQFTLIEVLKSAVVDTTGAGDAFNGALVAELARGSTLHQAAKYANAYA SLAVERLGAANMPDGSLVAARLNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_1076 | YP_853096.1 | carbohydrate kinase | Not tested | PAI IV APEC-O1 | Protein | 4e-51 | 44 |
| rbsk | YP_216390.1 | DeoR family transcriptional regulator | Not tested | SPI-2 | Protein | 7e-47 | 41 |
